SMTL ID : 1gyl.1

INVOLVEMENT OF TYR24 AND TRP108 IN SUBSTRATE BINDING AND SUBSTRATE SPECIFICITY OF GLYCOLATE OXIDASE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-octamer

Ligands

4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 23 residues within 4Å: Chain A: F.24, Y.25, A.76, P.77, A.79, S.106, W.108, Q.127, Y.129, T.155, K.230, S.252, H.254, G.255, R.257, D.285, G.286, G.287, R.289, I.307, G.308, R.309, P.310 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:F.24, A:Y.25, A:A.79, A:R.309 Hydrogen bonds: A:P.77, A:A.79, A:S.106, A:Q.127, A:Q.127, A:Y.129, A:T.155, A:K.230, A:K.230, A:S.252, A:G.255, A:G.287, A:G.308, A:R.309 Water bridges: A:H.254 Salt bridges: A:R.289, A:R.309 pi-Cation interactions: A:H.254 FMN.2: 23 residues within 4Å: Chain C: F.24, Y.25, A.76, P.77, A.79, S.106, W.108, Q.127, Y.129, T.155, K.230, S.252, H.254, G.255, R.257, D.285, G.286, G.287, R.289, I.307, G.308, R.309, P.310 22 PLIP interactions: 22 interactions with chain C Hydrophobic interactions: C:F.24, C:Y.25, C:A.79, C:R.309 Hydrogen bonds: C:P.77, C:A.79, C:S.106, C:Q.127, C:Q.127, C:Y.129, C:T.155, C:K.230, C:K.230, C:S.252, C:G.255, C:G.287, C:G.308, C:R.309 Water bridges: C:H.254 Salt bridges: C:R.289, C:R.309 pi-Cation interactions: C:H.254 FMN.3: 23 residues within 4Å: Chain E: F.24, Y.25, A.76, P.77, A.79, S.106, W.108, Q.127, Y.129, T.155, K.230, S.252, H.254, G.255, R.257, D.285, G.286, G.287, R.289, I.307, G.308, R.309, P.310 22 PLIP interactions: 22 interactions with chain E Hydrophobic interactions: E:F.24, E:Y.25, E:A.79, E:R.309 Hydrogen bonds: E:P.77, E:A.79, E:S.106, E:Q.127, E:Q.127, E:Y.129, E:T.155, E:K.230, E:K.230, E:S.252, E:G.255, E:G.287, E:G.308, E:R.309 Water bridges: E:H.254 Salt bridges: E:R.289, E:R.309 pi-Cation interactions: E:H.254 FMN.4: 23 residues within 4Å: Chain G: F.24, Y.25, A.76, P.77, A.79, S.106, W.108, Q.127, Y.129, T.155, K.230, S.252, H.254, G.255, R.257, D.285, G.286, G.287, R.289, I.307, G.308, R.309, P.310 22 PLIP interactions: 22 interactions with chain G Hydrophobic interactions: G:F.24, G:Y.25, G:A.79, G:R.309 Hydrogen bonds: G:P.77, G:A.79, G:S.106, G:Q.127, G:Q.127, G:Y.129, G:T.155, G:K.230, G:K.230, G:S.252, G:G.255, G:G.287, G:G.308, G:R.309 Water bridges: G:H.254 Salt bridges: G:R.289, G:R.309 pi-Cation interactions: G:H.254

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stenberg, K. et al., Involvement of Tyr24 and Trp108 in substrate binding and substrate specificity of glycolate oxidase. Eur.J.Biochem. (1995)

Release Date

1995-03-31

Peptides

GLYCOLATE OXIDASE: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

GLYCOLATE OXIDASE