- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x TTN: TARTRONATE(Non-covalent)
TTN.3: 11 residues within 4Å:- Chain A: Y.90, R.143, L.145, K.161, E.233, D.234, D.257, N.399, N.444, N.445
- Ligands: MN.4
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:K.161, A:N.399, A:N.444, A:N.445, A:N.445
- Water bridges: A:Y.90, A:Y.90
- Salt bridges: A:R.143, A:K.161
TTN.8: 11 residues within 4Å:- Chain B: Y.90, R.143, L.145, K.161, E.233, D.234, D.257, N.399, N.444, N.445
- Ligands: MN.9
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:L.145, B:K.161, B:N.399, B:N.444, B:N.445
- Water bridges: B:N.445
- Salt bridges: B:R.143, B:K.161
TTN.13: 11 residues within 4Å:- Chain C: Y.90, R.143, L.145, K.161, E.233, D.234, D.257, N.399, N.444, N.445
- Ligands: MN.14
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:Y.90, C:K.161, C:N.399, C:N.444, C:N.445
- Water bridges: C:N.445
- Salt bridges: C:R.143, C:K.161, C:K.161
TTN.18: 11 residues within 4Å:- Chain D: Y.90, R.143, L.145, K.161, E.233, D.234, D.257, N.399, N.444, N.445
- Ligands: MN.19
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:L.145, D:K.161, D:N.399, D:N.444, D:N.445
- Water bridges: D:Y.90, D:K.161, D:N.445
- Salt bridges: D:R.143, D:K.161
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.4: 5 residues within 4Å:- Chain A: R.143, E.233, D.234, D.257
- Ligands: TTN.3
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.233, A:D.234, A:D.257, H2O.6
MN.9: 5 residues within 4Å:- Chain B: R.143, E.233, D.234, D.257
- Ligands: TTN.8
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.233, B:D.234, B:D.257, H2O.12
MN.14: 6 residues within 4Å:- Chain C: R.143, K.161, E.233, D.234, D.257
- Ligands: TTN.13
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:E.233, C:D.234, C:D.257
MN.19: 5 residues within 4Å:- Chain D: R.143, E.233, D.234, D.257
- Ligands: TTN.18
4 PLIP interactions:3 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.233, D:D.234, D:D.257, H2O.22
- 4 x FUM: FUMARIC ACID(Non-covalent)
FUM.5: 8 residues within 4Å:- Chain A: Q.42, R.45, Y.62, I.66, R.69, L.73
- Chain B: F.105, R.106
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.73
- Water bridges: A:R.45, A:R.45, A:Y.62, A:Y.62
- Salt bridges: A:R.45, A:R.69
FUM.10: 7 residues within 4Å:- Chain A: F.105, R.106
- Chain B: Q.42, R.45, I.66, R.69, L.73
7 PLIP interactions:6 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:L.73
- Water bridges: B:E.37, B:Q.42, B:Y.62, A:F.105
- Salt bridges: B:R.45, B:R.69
FUM.15: 7 residues within 4Å:- Chain C: Q.42, R.45, I.66, R.69, L.73
- Chain D: F.105, R.106
8 PLIP interactions:7 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:L.73
- Water bridges: C:Q.42, C:R.45, C:Y.62, C:N.70, D:F.105
- Salt bridges: C:R.45, C:R.69
FUM.20: 7 residues within 4Å:- Chain C: F.105, R.106
- Chain D: Q.42, R.45, I.66, R.69, L.73
8 PLIP interactions:7 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:L.73
- Water bridges: D:E.37, D:Q.42, D:Y.62, D:N.70, C:F.105
- Salt bridges: D:R.45, D:R.69
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, Z. et al., Molecular Mechanism for the Regulation of Human Mitochondrial Nad(P)(+)-Dependent Malic Enzyme by ATP and Fumarate. Structure (2002)
- Release Date
- 2002-07-25
- Peptides
- NAD-DEPENDENT MALIC ENZYME: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x TTN: TARTRONATE(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x FUM: FUMARIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, Z. et al., Molecular Mechanism for the Regulation of Human Mitochondrial Nad(P)(+)-Dependent Malic Enzyme by ATP and Fumarate. Structure (2002)
- Release Date
- 2002-07-25
- Peptides
- NAD-DEPENDENT MALIC ENZYME: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D