SMTL ID : 1gzl.2 (1 other biounit)

Crystal structure of C14linkmid/IQN17: a cross-linked inhibitor of HIV-1 entry bound to the gp41 hydrophobic pocket

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-3-3-mer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 8 residues within 4Å: Chain A: Q.17, I.20 Chain C: Q.17, I.20 Chain E: Q.17, I.20 Ligands: CL.3, CL.5 Ligand excluded by PLIP CL.3: 8 residues within 4Å: Chain A: Q.17, I.20 Chain C: Q.17, I.20 Chain E: Q.17, I.20 Ligands: CL.1, CL.5 Ligand excluded by PLIP CL.5: 8 residues within 4Å: Chain A: Q.17, I.20 Chain C: Q.17, I.20 Chain E: Q.17, I.20 Ligands: CL.1, CL.3 Ligand excluded by PLIP

3 x N2P: PENTANE-1,5-DIAMINE(Covalent)

N2P.2: 4 residues within 4Å: Chain B: E.2, D.5, R.6, E.9 No protein-ligand interaction detected (PLIP) N2P.4: 4 residues within 4Å: Chain D: E.2, D.5, R.6, E.9 No protein-ligand interaction detected (PLIP) N2P.6: 4 residues within 4Å: Chain F: E.2, D.5, R.6, E.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sia, S.K. et al., Short Constrained Peptides that Inhibit HIV-1 Entry. Proc.Natl.Acad.Sci.USA (2002)

Release Date

2002-10-10

Peptides

FUSION PROTEIN BETWEEN THE HYDROPHOBIC POCKET OF HIV GP41 AND GENERAL CONTROL PROTEIN GCN4-PIQI: ACE
ENVELOPE GLYCOPROTEIN GP41: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
B

E
B

B
D

D
D

F
D

FUSION PROTEIN BETWEEN THE HYDROPHOBIC POCKET OF HIV GP41 AND GENERAL CONTROL PROTEIN GCN4-PIQI

ENVELOPE GLYCOPROTEIN GP41

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