- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.53 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x COA: COENZYME A(Non-covalent)
- 2 x PYR: PYRUVIC ACID(Non-covalent)
PYR.2: 10 residues within 4Å:- Chain A: R.176, A.272, A.273, F.327, W.333, C.418, F.432, R.435, L.604, I.606
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:A.272, A:F.327, A:W.333, A:F.432
- Water bridges: A:C.419
- Salt bridges: A:R.176, A:R.435
PYR.17: 10 residues within 4Å:- Chain B: R.176, A.272, A.273, F.327, W.333, C.418, F.432, R.435, L.604, I.606
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:A.272, B:F.327, B:W.333, B:F.432
- Water bridges: B:C.419
- Salt bridges: B:R.176, B:R.435
- 14 x NA: SODIUM ION(Non-functional Binders)
NA.3: 4 residues within 4Å:- Chain A: A.652, L.654, E.700, G.701
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:F.656, A:E.700
- Water bridges: A:E.700
NA.4: 4 residues within 4Å:- Chain A: E.214
- Chain B: E.214, Q.215, R.218
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Water bridges: B:R.218
- Hydrogen bonds: A:Y.499
NA.5: 3 residues within 4Å:- Chain A: T.80, I.81, S.268
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:I.81
NA.6: 3 residues within 4Å:- Chain A: G.687, L.688
- Ligands: PG4.15
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.687
NA.7: 2 residues within 4Å:- Chain A: Q.589, P.599
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.589
NA.8: 2 residues within 4Å:- Chain A: M.58, K.62
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.62, A:K.62
NA.9: 1 residues within 4Å:- Chain B: F.112
2 PLIP interactions:2 interactions with chain B- Water bridges: B:Q.269, B:Q.269
NA.18: 4 residues within 4Å:- Chain B: A.652, L.654, E.700, G.701
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:A.652, B:F.656, B:E.700
- Water bridges: B:E.700
NA.19: 4 residues within 4Å:- Chain A: E.214, Q.215, R.218
- Chain B: E.214
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:E.214, B:Y.499
- Water bridges: A:R.218
NA.20: 3 residues within 4Å:- Chain B: T.80, I.81, S.268
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:I.81
NA.21: 3 residues within 4Å:- Chain B: G.687, L.688
- Ligands: PG4.30
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.687
NA.22: 2 residues within 4Å:- Chain B: Q.589, P.599
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.589
NA.23: 2 residues within 4Å:- Chain B: M.58, K.62
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.62, B:K.62
- Water bridges: B:E.59
NA.24: 1 residues within 4Å:- Chain A: F.112
3 PLIP interactions:3 interactions with chain A- Water bridges: A:S.268, A:Q.269, A:Q.269
- 2 x MG: MAGNESIUM ION(Non-functional Binders)
- 4 x DTL: L-TREITOL(Non-covalent)
DTL.11: 7 residues within 4Å:- Chain A: E.225, R.228, Q.232
- Chain B: T.138, E.139, Y.140, K.142
9 PLIP interactions:4 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:Y.140, A:R.228, A:Q.232
- Water bridges: B:T.138, B:E.139, B:T.143, A:R.141, A:E.225, A:R.228
DTL.12: 9 residues within 4Å:- Chain A: H.68, A.69, P.70, R.107, Y.125, D.324, G.329, D.330, S.741
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:Y.125, A:Y.125, A:D.324
- Water bridges: A:R.107, A:R.107, A:R.107, A:R.319, A:G.329, A:G.329, A:D.330
DTL.26: 7 residues within 4Å:- Chain A: T.138, E.139, Y.140, K.142
- Chain B: E.225, R.228, Q.232
10 PLIP interactions:6 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:R.228, B:Q.232, A:Y.140
- Water bridges: B:R.141, B:E.225, B:E.225, B:R.228, A:T.138, A:E.139, A:T.143
DTL.27: 9 residues within 4Å:- Chain B: H.68, A.69, P.70, R.107, Y.125, D.324, G.329, D.330, S.741
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:Y.125, B:D.324
- Water bridges: B:R.107, B:R.107, B:R.107, B:R.319, B:G.329, B:G.329, B:D.330, B:D.330
- 6 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.13: 4 residues within 4Å:- Chain A: E.40, S.41, L.43, Y.361
No protein-ligand interaction detected (PLIP)PG4.14: 5 residues within 4Å:- Chain A: A.198, Q.199, S.202, R.516, D.517
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:S.202, A:R.516, A:D.517
- Water bridges: A:D.195, A:D.195, A:D.195, A:D.195, A:D.195, A:R.516
PG4.15: 8 residues within 4Å:- Chain A: V.645, L.648, T.649, G.687, L.688, G.691, Y.692
- Ligands: NA.6
1 PLIP interactions:1 interactions with chain A- Water bridges: A:T.649
PG4.28: 4 residues within 4Å:- Chain B: E.40, S.41, L.43, Y.361
No protein-ligand interaction detected (PLIP)PG4.29: 5 residues within 4Å:- Chain B: A.198, Q.199, S.202, R.516, D.517
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:S.202, B:R.516
- Water bridges: B:D.195, B:D.195, B:D.195, B:R.516
PG4.30: 8 residues within 4Å:- Chain B: V.645, L.648, T.649, G.687, L.688, G.691, Y.692
- Ligands: NA.21
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Becker, A. et al., X-Ray Structure of Pyruvate Formate-Lyase in Complex with Pyruvate and Coa.How the Enzyme Uses the Cys-418 Thiyl Radical for Pyruvate Cleavage. J.Biol.Chem. (2002)
- Release Date
- 2002-11-01
- Peptides
- FORMATE ACETYLTRANSFERASE 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.53 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x COA: COENZYME A(Non-covalent)
- 2 x PYR: PYRUVIC ACID(Non-covalent)
- 14 x NA: SODIUM ION(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-functional Binders)
- 4 x DTL: L-TREITOL(Non-covalent)
- 6 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Becker, A. et al., X-Ray Structure of Pyruvate Formate-Lyase in Complex with Pyruvate and Coa.How the Enzyme Uses the Cys-418 Thiyl Radical for Pyruvate Cleavage. J.Biol.Chem. (2002)
- Release Date
- 2002-11-01
- Peptides
- FORMATE ACETYLTRANSFERASE 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A