- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PYR: PYRUVIC ACID(Non-covalent)
- 7 x NA: SODIUM ION(Non-functional Binders)
NA.2: 4 residues within 4Å:- Chain A: A.652, L.654, E.700, G.701
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.654, A:E.700
NA.3: 4 residues within 4Å:- Chain A: Y.499
- Chain B: E.214, Q.215, R.218
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:R.218, A:Y.499
- Water bridges: B:R.218
NA.4: 2 residues within 4Å:- Chain A: G.687, L.688
No protein-ligand interaction detected (PLIP)NA.11: 5 residues within 4Å:- Chain B: A.652, L.654, F.656, E.700, G.701
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:F.656, B:E.700, B:G.701
- Water bridges: B:Q.703
NA.12: 3 residues within 4Å:- Chain B: T.80, I.81, Q.232
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:I.81
- Water bridges: B:S.79, B:T.80, B:T.82, B:Q.232
NA.13: 1 residues within 4Å:- Chain B: K.62
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.62, B:K.62
NA.14: 1 residues within 4Å:- Chain A: F.112
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.141
- 4 x DTL: L-TREITOL(Non-covalent)
DTL.5: 8 residues within 4Å:- Chain A: E.225, R.228, Q.232
- Chain B: T.138, E.139, Y.140, K.142, Q.146
8 PLIP interactions:5 interactions with chain B, 3 interactions with chain A- Water bridges: B:T.138, B:Y.140, B:R.141, B:K.142, B:Q.146, A:R.228
- Hydrogen bonds: A:R.228, A:Q.232
DTL.6: 8 residues within 4Å:- Chain A: H.68, A.69, P.70, R.107, Y.125, D.324, D.330, S.741
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:Y.125, A:D.324
- Water bridges: A:R.107, A:R.107, A:R.319, A:D.324, A:G.329
DTL.15: 6 residues within 4Å:- Chain A: T.138, E.139, K.142
- Chain B: E.225, R.228, Q.232
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Water bridges: A:E.139, A:R.141, B:R.228
- Hydrogen bonds: B:R.228, B:Q.232
DTL.16: 7 residues within 4Å:- Chain B: H.68, A.69, P.70, Y.125, D.324, D.330, S.741
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:Y.125, B:Y.125, B:D.324, B:D.330
- Water bridges: B:N.65, B:R.107, B:R.107, B:R.107, B:G.329
- 5 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.7: 4 residues within 4Å:- Chain A: E.40, S.41, L.43, Y.361
No protein-ligand interaction detected (PLIP)PG4.8: 1 residues within 4Å:- Chain A: A.238
No protein-ligand interaction detected (PLIP)PG4.9: 6 residues within 4Å:- Chain A: V.645, L.648, T.649, L.688, G.691, Y.692
No protein-ligand interaction detected (PLIP)PG4.17: 4 residues within 4Å:- Chain B: E.40, L.43, N.358, Y.361
No protein-ligand interaction detected (PLIP)PG4.18: 5 residues within 4Å:- Chain B: V.645, T.649, L.688, G.691, Y.692
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Becker, A. et al., X-Ray Structure of Pyruvate Formate-Lyase in Complex with Pyruvate and Coa.How the Enzyme Uses the Cys-418 Thiyl Radical for Pyruvate Cleavage. J.Biol.Chem. (2002)
- Release Date
- 2002-11-01
- Peptides
- FORMATE ACETYLTRANSFERASE 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PYR: PYRUVIC ACID(Non-covalent)
- 7 x NA: SODIUM ION(Non-functional Binders)
- 4 x DTL: L-TREITOL(Non-covalent)
- 5 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Becker, A. et al., X-Ray Structure of Pyruvate Formate-Lyase in Complex with Pyruvate and Coa.How the Enzyme Uses the Cys-418 Thiyl Radical for Pyruvate Cleavage. J.Biol.Chem. (2002)
- Release Date
- 2002-11-01
- Peptides
- FORMATE ACETYLTRANSFERASE 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B