SMTL ID : 1h1t.1

PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE IN COMPLEX WITH Coenzyme A FROM ESCHERICHIA COLI

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-hexamer

Ligands

3 x COA: COENZYME A(Non-covalent)

COA.1: 16 residues within 4Å: Chain A: P.8, G.9, T.10, D.72, L.73, M.74, R.88, R.91, A.94, D.95, Y.98, E.99, L.102, N.106 Chain C: E.134, H.138 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:P.8 Hydrogen bonds: A:T.10, A:T.10, A:M.74, A:R.88, A:D.95, A:D.95, A:Y.98, A:E.99, A:N.106 Water bridges: A:F.11, A:A.75, A:R.88, A:R.88 Salt bridges: A:R.88, A:R.91 pi-Stacking: A:Y.98, A:Y.98 COA.7: 16 residues within 4Å: Chain C: P.8, G.9, T.10, D.72, L.73, M.74, R.88, R.91, A.94, D.95, Y.98, E.99, L.102, N.106 Chain E: E.134, H.138 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:P.8 Hydrogen bonds: C:T.10, C:T.10, C:M.74, C:R.88, C:D.95, C:D.95, C:E.99, C:E.99, C:N.106 Water bridges: C:F.11, C:A.75, C:R.88, C:R.88 Salt bridges: C:R.88, C:R.91 pi-Stacking: C:Y.98, C:Y.98 COA.13: 16 residues within 4Å: Chain A: E.134, H.138 Chain E: P.8, G.9, T.10, D.72, L.73, M.74, R.88, R.91, A.94, D.95, Y.98, E.99, L.102, N.106 19 PLIP interactions: 19 interactions with chain E Hydrophobic interactions: E:P.8 Hydrogen bonds: E:T.10, E:T.10, E:M.74, E:R.88, E:D.95, E:D.95, E:Y.98, E:E.99, E:E.99, E:N.106 Water bridges: E:F.11, E:A.75, E:R.88, E:R.88 Salt bridges: E:R.88, E:R.91 pi-Stacking: E:Y.98, E:Y.98

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: S.121, K.122 Chain B: H.104, R.107 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.24, A:K.122 Water bridges: A:E.123, A:E.123 Salt bridges: A:K.122, B:R.107 SO4.3: 4 residues within 4Å: Chain A: H.104, R.107 Chain B: S.121, K.122 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.122 Water bridges: B:R.24, B:E.123, B:E.123 Salt bridges: B:K.122, A:R.107 SO4.4: 4 residues within 4Å: Chain B: H.18, R.91, S.128, S.129 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.129 Water bridges: B:H.18, B:I.127, B:S.130 Salt bridges: B:H.18, B:R.91 SO4.5: 5 residues within 4Å: Chain B: S.39, P.40, S.41 Chain F: R.137, H.138 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain F Hydrogen bonds: B:S.41, B:S.41, B:S.41 Water bridges: B:S.39, B:S.39 Salt bridges: F:R.137, F:H.138 SO4.8: 4 residues within 4Å: Chain C: S.121, K.122 Chain D: H.104, R.107 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:R.24, C:K.122 Water bridges: C:E.123, C:E.123 Salt bridges: C:K.122, D:R.107 SO4.9: 4 residues within 4Å: Chain C: H.104, R.107 Chain D: S.121, K.122 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:K.122 Water bridges: D:R.24, D:E.123, D:E.123 Salt bridges: D:K.122, C:R.107 SO4.10: 4 residues within 4Å: Chain D: H.18, R.91, S.128, S.129 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:S.129 Water bridges: D:H.18, D:I.127, D:S.130 Salt bridges: D:H.18, D:R.91 SO4.11: 5 residues within 4Å: Chain B: R.137, H.138 Chain D: S.39, P.40, S.41 7 PLIP interactions: 5 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:S.41, D:S.41, D:S.41 Water bridges: D:S.39, D:S.39 Salt bridges: B:R.137, B:H.138 SO4.14: 4 residues within 4Å: Chain E: S.121, K.122 Chain F: H.104, R.107 6 PLIP interactions: 1 interactions with chain F, 5 interactions with chain E Salt bridges: F:R.107, E:K.122 Hydrogen bonds: E:R.24, E:K.122 Water bridges: E:E.123, E:E.123 SO4.15: 4 residues within 4Å: Chain E: H.104, R.107 Chain F: S.121, K.122 6 PLIP interactions: 5 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:K.122 Water bridges: F:R.24, F:E.123, F:E.123 Salt bridges: F:K.122, E:R.107 SO4.16: 4 residues within 4Å: Chain F: H.18, R.91, S.128, S.129 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:S.129 Water bridges: F:H.18, F:I.127, F:S.130 Salt bridges: F:H.18, F:R.91 SO4.17: 5 residues within 4Å: Chain D: R.137, H.138 Chain F: S.39, P.40, S.41 7 PLIP interactions: 5 interactions with chain F, 2 interactions with chain D Hydrogen bonds: F:S.41, F:S.41, F:S.41 Water bridges: F:S.39, F:S.39 Salt bridges: D:R.137, D:H.138

3 x PNS: 4'-PHOSPHOPANTETHEINE(Non-covalent)

PNS.6: 15 residues within 4Å: Chain B: P.8, G.9, T.10, A.37, K.42, F.70, D.72, L.73, M.74, R.88, M.105, N.106 Chain F: E.134, V.135, H.138 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain F Hydrophobic interactions: B:P.8, B:A.37 Hydrogen bonds: B:T.10, B:M.74, F:E.134, F:E.134 Water bridges: B:F.11, B:A.75 Salt bridges: B:K.42, B:R.88 PNS.12: 15 residues within 4Å: Chain B: E.134, V.135, H.138 Chain D: P.8, G.9, T.10, A.37, K.42, F.70, D.72, L.73, M.74, R.88, M.105, N.106 9 PLIP interactions: 8 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: D:P.8, D:A.37 Hydrogen bonds: D:T.10, D:M.74, B:E.134 Water bridges: D:F.11, D:A.75 Salt bridges: D:K.42, D:R.88 PNS.18: 15 residues within 4Å: Chain D: E.134, V.135, H.138 Chain F: P.8, G.9, T.10, A.37, K.42, F.70, D.72, L.73, M.74, R.88, M.105, N.106 10 PLIP interactions: 9 interactions with chain F, 1 interactions with chain D Hydrophobic interactions: F:P.8, F:A.37 Hydrogen bonds: F:T.10, F:T.10, F:M.74, D:E.134 Water bridges: F:F.11, F:A.75 Salt bridges: F:K.42, F:R.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Izard, T., A Novel Adenylate Binding Site Confers Phosphopantetheine Adenylyltransferase Interactions with Coenzyme A. J.Bacteriol. (2003)

Release Date

2003-07-07

Peptides

PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE

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