- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.62 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x OCA: OCTANOIC ACID (CAPRYLIC ACID)(Non-covalent)
- 4 x NAJ: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)(Non-covalent)
NAJ.2: 32 residues within 4Å:- Chain A: C.54, H.55, T.56, H.59, D.168, T.172, V.193, G.194, V.195, G.196, G.197, L.198, L.217, D.218, V.219, K.223, A.238, F.261, V.262, T.267, Y.270, V.284, G.285, Y.286, S.307, L.308, V.309, L.346, R.354
- Chain C: I.298
- Ligands: OCA.1, ZN.3
22 PLIP interactions:22 interactions with chain A- Hydrophobic interactions: A:T.172
- Hydrogen bonds: A:H.55, A:T.56, A:H.59, A:T.172, A:V.195, A:G.197, A:L.198, A:V.262, A:Y.270, A:V.284, A:Y.286, A:V.309
- Water bridges: A:G.196, A:G.199, A:S.264, A:S.264, A:G.353, A:R.354, A:R.354
- Salt bridges: A:H.55, A:R.354
NAJ.7: 32 residues within 4Å:- Chain B: C.54, H.55, T.56, H.59, D.168, T.172, V.193, G.194, V.195, G.196, G.197, L.198, L.217, D.218, V.219, K.223, A.238, F.261, V.262, T.267, Y.270, V.284, G.285, Y.286, S.307, L.308, V.309, L.346, R.354
- Chain D: I.298
- Ligands: OCA.6, ZN.8
20 PLIP interactions:20 interactions with chain B- Hydrophobic interactions: B:T.172, B:L.198
- Hydrogen bonds: B:H.55, B:H.59, B:V.195, B:V.195, B:G.197, B:L.198, B:V.262, B:V.284, B:Y.286, B:V.309
- Water bridges: B:G.196, B:G.199, B:S.264, B:S.264, B:G.353, B:R.354
- Salt bridges: B:H.55, B:R.354
NAJ.11: 32 residues within 4Å:- Chain A: I.298
- Chain C: C.54, H.55, T.56, H.59, D.168, T.172, V.193, G.194, V.195, G.196, G.197, L.198, L.217, D.218, V.219, K.223, A.238, F.261, V.262, T.267, Y.270, V.284, G.285, Y.286, S.307, L.308, V.309, L.346, R.354
- Ligands: OCA.10, ZN.12
22 PLIP interactions:22 interactions with chain C- Hydrophobic interactions: C:T.172
- Hydrogen bonds: C:H.55, C:T.56, C:H.59, C:T.172, C:V.195, C:G.197, C:L.198, C:V.262, C:Y.270, C:V.284, C:Y.286, C:V.309
- Water bridges: C:G.196, C:G.199, C:S.264, C:S.264, C:G.353, C:R.354, C:R.354
- Salt bridges: C:H.55, C:R.354
NAJ.16: 32 residues within 4Å:- Chain B: I.298
- Chain D: C.54, H.55, T.56, H.59, D.168, T.172, V.193, G.194, V.195, G.196, G.197, L.198, L.217, D.218, V.219, K.223, A.238, F.261, V.262, T.267, Y.270, V.284, G.285, Y.286, S.307, L.308, V.309, L.346, R.354
- Ligands: OCA.15, ZN.17
20 PLIP interactions:20 interactions with chain D- Hydrophobic interactions: D:T.172, D:L.198
- Hydrogen bonds: D:H.55, D:H.59, D:V.195, D:V.195, D:G.197, D:L.198, D:V.262, D:V.284, D:Y.286, D:V.309
- Water bridges: D:G.196, D:G.199, D:S.264, D:S.264, D:G.353, D:R.354
- Salt bridges: D:H.55, D:R.354
- 10 x ZN: ZINC ION(Non-covalent)
ZN.3: 6 residues within 4Å:- Chain A: C.54, T.56, H.79, D.168
- Ligands: OCA.1, NAJ.2
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:C.54, A:H.79, A:D.168
ZN.4: 3 residues within 4Å:- Chain A: D.332, H.334, R.345
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.332, A:D.332, A:H.334, H2O.12
ZN.5: 6 residues within 4Å:- Chain A: D.109, G.110, C.112, C.115, C.123, E.124
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.109, A:C.112, A:C.115, A:C.123
ZN.8: 6 residues within 4Å:- Chain B: C.54, T.56, H.79, D.168
- Ligands: OCA.6, NAJ.7
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:C.54, B:H.79, B:D.168
ZN.9: 6 residues within 4Å:- Chain B: D.109, G.110, C.112, C.115, C.123, E.124
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.109, B:C.112, B:C.115
ZN.12: 6 residues within 4Å:- Chain C: C.54, T.56, H.79, D.168
- Ligands: OCA.10, NAJ.11
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:C.54, C:H.79, C:D.168
ZN.13: 3 residues within 4Å:- Chain C: D.332, H.334, R.345
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.332, C:D.332, C:H.334, H2O.38
ZN.14: 6 residues within 4Å:- Chain C: D.109, G.110, C.112, C.115, C.123, E.124
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.109, C:C.112, C:C.115, C:C.123
ZN.17: 6 residues within 4Å:- Chain D: C.54, T.56, H.79, D.168
- Ligands: OCA.15, NAJ.16
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:C.54, D:H.79, D:D.168
ZN.18: 6 residues within 4Å:- Chain D: D.109, G.110, C.112, C.115, C.123, E.124
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:D.109, D:C.112, D:C.115
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Guy, J.E. et al., The structure of an alcohol dehydrogenase from the hyperthermophilic archaeon Aeropyrum pernix. J.Mol.Biol. (2003)
- Release Date
- 2003-08-28
- Peptides
- ALCOHOL DEHYDROGENASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.62 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x OCA: OCTANOIC ACID (CAPRYLIC ACID)(Non-covalent)
- 4 x NAJ: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)(Non-covalent)
- 10 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Guy, J.E. et al., The structure of an alcohol dehydrogenase from the hyperthermophilic archaeon Aeropyrum pernix. J.Mol.Biol. (2003)
- Release Date
- 2003-08-28
- Peptides
- ALCOHOL DEHYDROGENASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B