SMTL ID : 1h2c.1

Ebola virus matrix protein VP40 N-terminal domain in complex with RNA (High-resolution VP40[55-194] variant).

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-octamer

Ligands

8 x U- G- A: 5'-R(*UP*GP*AP)-3'(Non-covalent)

U-G-A.1: 16 residues within 4Å: Chain A: T.69, H.70, F.71, G.72, K.73, R.80, Y.117 Chain B: F.71, L.78, R.80, I.98, N.100, A.102, L.104 Ligands: U-G-A.2, U-G-A.6 Protein-ligand interaction information (PLIP) not available U-G-A.2: 16 residues within 4Å: Chain A: F.71, L.78, R.80, I.98, N.100, A.102, L.104 Chain B: T.69, H.70, F.71, G.72, K.73, R.80, Y.117 Ligands: U-G-A.1, U-G-A.4 Protein-ligand interaction information (PLIP) not available U-G-A.3: 16 residues within 4Å: Chain C: T.69, H.70, F.71, G.72, K.73, R.80, Y.117 Chain D: F.71, L.78, R.80, I.98, N.100, A.102, L.104 Ligands: U-G-A.4, U-G-A.8 Protein-ligand interaction information (PLIP) not available U-G-A.4: 16 residues within 4Å: Chain C: F.71, L.78, R.80, I.98, N.100, A.102, L.104 Chain D: T.69, H.70, F.71, G.72, K.73, R.80, Y.117 Ligands: U-G-A.2, U-G-A.3 Protein-ligand interaction information (PLIP) not available U-G-A.5: 16 residues within 4Å: Chain E: T.69, H.70, F.71, G.72, K.73, R.80, Y.117 Chain F: F.71, L.78, R.80, I.98, N.100, A.102, L.104 Ligands: U-G-A.6, U-G-A.7 Protein-ligand interaction information (PLIP) not available U-G-A.6: 16 residues within 4Å: Chain E: F.71, L.78, R.80, I.98, N.100, A.102, L.104 Chain F: T.69, H.70, F.71, G.72, K.73, R.80, Y.117 Ligands: U-G-A.1, U-G-A.5 Protein-ligand interaction information (PLIP) not available U-G-A.7: 16 residues within 4Å: Chain G: T.69, H.70, F.71, G.72, K.73, R.80, Y.117 Chain H: F.71, L.78, R.80, I.98, N.100, A.102, L.104 Ligands: U-G-A.5, U-G-A.8 Protein-ligand interaction information (PLIP) not available U-G-A.8: 16 residues within 4Å: Chain G: F.71, L.78, R.80, I.98, N.100, A.102, L.104 Chain H: T.69, H.70, F.71, G.72, K.73, R.80, Y.117 Ligands: U-G-A.3, U-G-A.7 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gomis-Ruth, F.X. et al., The Matrix Protein Vp40 from Ebola Virus Octamerizes Into Pore-Like Structures with Specific RNA Binding Properties. Structure (2003)

Release Date

2003-04-10

Peptides

MATRIX PROTEIN VP40: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

MATRIX PROTEIN VP40