SMTL ID : 1h2s.1

Molecular basis of transmenbrane signalling by sensory rhodopsin II-transducer complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

hetero-2-2-mer

Ligands

2 x BOG: octyl beta-D-glucopyranoside(Post Translational Modification)

BOG.1: 10 residues within 4Å: Chain A: R.35, Y.36, Y.37, L.40, R.152, I.156, A.212, L.213, L.219, H.223 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.36, A:Y.36, A:Y.37, A:L.40, A:A.212, A:L.213 Hydrogen bonds: A:Y.36, A:H.223 Water bridges: A:R.152 Salt bridges: A:R.152 BOG.3: 10 residues within 4Å: Chain C: R.35, Y.36, Y.37, L.40, R.152, I.156, A.212, L.213, L.219, H.223 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:Y.36, C:Y.36, C:Y.37, C:L.40, C:A.212, C:L.213 Hydrogen bonds: C:Y.36, C:H.223 Water bridges: C:R.152 Salt bridges: C:R.152

2 x RET: RETINAL(Covalent)

RET.2: 16 residues within 4Å: Chain A: W.76, T.80, I.83, V.108, G.112, F.127, G.130, A.131, F.134, W.171, Y.174, P.175, W.178, D.201, T.204, K.205 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:W.76, A:T.80, A:I.83, A:V.108, A:F.127, A:F.127, A:F.134, A:W.171, A:W.171, A:Y.174, A:Y.174, A:Y.174, A:Y.174, A:P.175, A:W.178, A:W.178, A:K.205 RET.4: 16 residues within 4Å: Chain C: W.76, T.80, I.83, V.108, G.112, F.127, G.130, A.131, F.134, W.171, Y.174, P.175, W.178, D.201, T.204, K.205 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:W.76, C:T.80, C:I.83, C:V.108, C:F.127, C:F.127, C:F.134, C:W.171, C:W.171, C:Y.174, C:Y.174, C:Y.174, C:Y.174, C:P.175, C:W.178, C:W.178, C:K.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gordeliy, V.I. et al., Molecular Basis of Transmembrane Signalling by Sensory Rhodopsin II-Transducer Complex. Nature (2002)

Release Date

2002-10-10

Peptides

SENSORY RHODOPSIN II: AC
SENSORY RHODOPSIN II TRANSDUCER: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Membrane

We predict this structure to be a membrane protein.
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SENSORY RHODOPSIN II

SENSORY RHODOPSIN II TRANSDUCER

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