SMTL ID : 1h32.1

REDUCED SOXAX COMPLEX FROM RHODOVULUM SULFIDOPHILUM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-oligomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: D.192, R.206, R.218, N.261 Ligands: HEC.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.192, A:R.218, A:R.218, A:D.225, A:D.225, A:N.261 Water bridges: A:R.206, A:R.224 EDO.4: 5 residues within 4Å: Chain A: L.173, L.175 Chain B: N.41, A.44 Ligands: HEC.3 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:D.225 Water bridges: B:N.41, B:N.41, B:N.41

3 x HEC: HEME C(Covalent)

HEC.2: 16 residues within 4Å: Chain A: W.65, K.74, A.75, C.76, C.79, H.80, M.87, L.90, Y.94, M.110, I.111, C.114, R.115, R.118, M.119, M.134 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:W.65, A:K.74, A:L.90, A:M.110, A:I.111, A:R.118 Water bridges: A:K.96 Salt bridges: A:K.96 pi-Stacking: A:H.80, A:H.80, A:H.80 pi-Cation interactions: A:R.118 Metal complexes: A:H.80, A:C.114 HEC.3: 24 residues within 4Å: Chain A: G.34, R.38, L.175, S.176, C.177, C.180, H.181, I.189, D.192, H.193, L.194, S.195, G.197, Q.198, I.199, F.202, R.218, F.219, C.222, I.223, R.260, N.261 Ligands: EDO.1, EDO.4 22 PLIP interactions: 22 interactions with chain A, Hydrophobic interactions: A:L.175, A:L.175, A:I.189, A:D.192, A:L.194, A:I.199, A:F.202, A:R.218, A:F.219, A:I.223 Hydrogen bonds: A:G.34, A:S.195 Water bridges: A:S.195, A:G.201, A:R.218, A:N.261 Salt bridges: A:R.38, A:H.181, A:R.260 pi-Stacking: A:H.181, A:H.181 Metal complexes: A:H.181 HEC.5: 24 residues within 4Å: Chain A: Y.184 Chain B: G.40, N.41, C.42, C.45, H.46, V.60, G.61, P.62, L.64, V.67, R.70, Y.71, I.79, L.80, F.87, T.90, V.91, M.92, P.93, Y.95, M.121, V.129, L.133 22 PLIP interactions: 2 interactions with chain A, 20 interactions with chain B, Water bridges: A:Y.184, A:Y.184, B:V.91 Hydrophobic interactions: B:P.62, B:L.64, B:V.67, B:Y.71, B:I.79, B:I.79, B:L.80, B:F.87, B:V.91, B:M.92, B:Y.95, B:V.129, B:L.133 Salt bridges: B:R.70 pi-Stacking: B:H.46, B:H.46, B:H.46, B:H.46 Metal complexes: B:H.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bamford, V.A. et al., Structural Basis for the Oxidation of Thiosulfate by a Sulfur Cycle Enzyme. Embo J. (2002)

Release Date

2002-11-07

Peptides

DIHEME CYTOCHROME C: A
CYTOCHROME C: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DIHEME CYTOCHROME C

CYTOCHROME C

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