SMTL ID : 1h3d.1

STRUCTURE OF THE E.COLI ATP-PHOSPHORIBOSYLTRANSFERASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-hexamer

Ligands

6 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 11 residues within 4Å: Chain A: R.16, C.104, E.156, D.169, L.170, V.171, S.172, T.173, G.174, A.175, T.176 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.103, A:D.169, A:S.172, A:T.173, A:T.173, A:T.173, A:G.174, A:A.175, A:T.176, A:T.176, A:T.176 pi-Cation interactions: A:R.16 AMP.4: 11 residues within 4Å: Chain B: R.16, C.104, E.156, D.169, L.170, V.171, S.172, T.173, G.174, A.175, T.176 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:G.103, B:D.169, B:S.172, B:T.173, B:T.173, B:T.173, B:G.174, B:A.175, B:T.176, B:T.176, B:T.176 pi-Cation interactions: B:R.16 AMP.7: 11 residues within 4Å: Chain C: R.16, C.104, E.156, D.169, L.170, V.171, S.172, T.173, G.174, A.175, T.176 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:G.103, C:D.169, C:S.172, C:T.173, C:T.173, C:T.173, C:G.174, C:A.175, C:T.176, C:T.176, C:T.176 pi-Cation interactions: C:R.16 AMP.10: 11 residues within 4Å: Chain D: R.16, C.104, E.156, D.169, L.170, V.171, S.172, T.173, G.174, A.175, T.176 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:G.103, D:D.169, D:S.172, D:T.173, D:T.173, D:T.173, D:G.174, D:A.175, D:T.176, D:T.176, D:T.176 pi-Cation interactions: D:R.16 AMP.13: 11 residues within 4Å: Chain E: R.16, C.104, E.156, D.169, L.170, V.171, S.172, T.173, G.174, A.175, T.176 12 PLIP interactions: 12 interactions with chain E Hydrogen bonds: E:G.103, E:D.169, E:S.172, E:T.173, E:T.173, E:T.173, E:G.174, E:A.175, E:T.176, E:T.176, E:T.176 pi-Cation interactions: E:R.16 AMP.16: 11 residues within 4Å: Chain F: R.16, C.104, E.156, D.169, L.170, V.171, S.172, T.173, G.174, A.175, T.176 12 PLIP interactions: 12 interactions with chain F Hydrogen bonds: F:G.103, F:D.169, F:S.172, F:T.173, F:T.173, F:T.173, F:G.174, F:A.175, F:T.176, F:T.176, F:T.176 pi-Cation interactions: F:R.16

12 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.2: 7 residues within 4Å: Chain A: A.26, R.27, C.28, G.29, K.296 Chain C: F.274, W.275 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:A.26, C:W.275 Salt bridges: A:R.27, A:K.296, A:K.296 TLA.3: 3 residues within 4Å: Chain A: R.92, Y.93, T.95 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.85, A:Y.93, A:Y.93, A:T.95 TLA.5: 7 residues within 4Å: Chain B: A.26, R.27, C.28, G.29, K.296 Chain F: F.274, W.275 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain F Hydrogen bonds: B:A.26, F:W.275 Salt bridges: B:R.27, B:K.296, B:K.296 TLA.6: 3 residues within 4Å: Chain B: R.92, Y.93, T.95 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.85, B:Y.93, B:Y.93, B:Y.93 TLA.8: 7 residues within 4Å: Chain C: A.26, R.27, C.28, G.29, K.296 Chain D: F.274, W.275 5 PLIP interactions: 1 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:W.275, C:A.26 Salt bridges: C:R.27, C:K.296, C:K.296 TLA.9: 3 residues within 4Å: Chain C: R.92, Y.93, T.95 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.85, C:Y.93, C:Y.93, C:T.95 TLA.11: 7 residues within 4Å: Chain A: F.274, W.275 Chain D: A.26, R.27, C.28, G.29, K.296 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:A.26, A:W.275 Salt bridges: D:R.27, D:K.296, D:K.296 TLA.12: 3 residues within 4Å: Chain D: R.92, Y.93, T.95 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:R.85, D:Y.93, D:Y.93, D:T.95 TLA.14: 7 residues within 4Å: Chain B: F.274, W.275 Chain E: A.26, R.27, C.28, G.29, K.296 5 PLIP interactions: 4 interactions with chain E, 1 interactions with chain B Hydrogen bonds: E:A.26, B:W.275 Salt bridges: E:R.27, E:K.296, E:K.296 TLA.15: 3 residues within 4Å: Chain E: R.92, Y.93, T.95 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:R.85, E:Y.93, E:Y.93, E:Y.93 TLA.17: 7 residues within 4Å: Chain E: F.274, W.275 Chain F: A.26, R.27, C.28, G.29, K.296 5 PLIP interactions: 4 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:A.26, E:W.275 Salt bridges: F:R.27, F:K.296, F:K.296 TLA.18: 3 residues within 4Å: Chain F: R.92, Y.93, T.95 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:R.85, F:Y.93, F:Y.93, F:Y.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lohkamp, B. et al., The Structure of Escherichia Coli ATP-Phosphoribosyltransferase: Identification of Substrate Binding Sites and Mode of AMP Inhibition. J.Mol.Biol. (2004)

Release Date

2003-10-03

Peptides

ATP-PHOSPHORIBOSYLTRANSFERASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

ATP-PHOSPHORIBOSYLTRANSFERASE

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