SMTL ID : 1h3f.1

Tyrosyl-tRNA synthetase from Thermus thermophilus complexed with tyrosinol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain B: T.358, R.429, S.431, D.432 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.429 SO4.2: 5 residues within 4Å: Chain A: R.48, H.52, H.55, S.234, K.235 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.235 Salt bridges: A:R.48, A:H.52, A:H.55 SO4.3: 6 residues within 4Å: Chain B: R.48, H.52, H.55, M.233, S.234, K.235 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.48, B:K.235 Salt bridges: B:H.52, B:H.55, B:K.232 SO4.4: 2 residues within 4Å: Chain B: P.263, R.267 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.267 SO4.5: 4 residues within 4Å: Chain A: R.256, Y.342, A.346, K.347 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.342, A:K.347, A:K.347 Salt bridges: A:R.256

2 x TYE: 4-[(2S)-2-amino-3-hydroxypropyl]phenol(Non-covalent)

TYE.6: 8 residues within 4Å: Chain A: K.41, G.43, D.45, Q.179, D.182, E.191, Q.197, N.200 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Q.179 Hydrogen bonds: A:K.41, A:D.182, A:D.182, A:Q.197, A:Q.197, A:N.200 TYE.7: 6 residues within 4Å: Chain B: K.41, G.43, Q.179, D.182, E.191, Q.197 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Q.179 Hydrogen bonds: B:K.41, B:K.41, B:Q.179, B:Q.197, B:Q.197, B:N.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yaremchuk, A. et al., Class I Tyrosyl-tRNA Synthetase Has a Class II Mode or tRNA Recognition. Embo J. (2002)

Release Date

2002-09-12

Peptides

TYROSYL-TRNA SYNTHETASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TYROSYL-TRNA SYNTHETASE

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