SMTL ID : 1h3j.2 (1 other biounit)

STRUCTURE OF RECOMBINANT COPRINUS CINEREUS PEROXIDASE DETERMINED TO 2.0 A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: A.80, R.102, I.106, G.109, V.110, F.112, N.141 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.102

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 23 residues within 4Å: Chain A: R.46, K.47, L.49, R.50, F.53, P.152, G.153, P.154, I.161, L.178, L.179, A.181, H.182, L.184, A.185, S.186, Q.187, E.188, G.189, L.190, M.241, S.243, M.275 30 PLIP interactions: 29 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:R.46, A:L.49, A:R.50, A:F.53, A:F.53, A:F.53, A:F.53, A:P.152, A:P.154, A:I.161, A:L.178, A:L.179, A:L.179, A:A.181, A:A.185, A:Q.187 Hydrogen bonds: A:S.186, A:E.188, A:G.189, A:L.190 Water bridges: A:R.46, A:K.47, A:R.50, A:R.50, A:R.50 Salt bridges: A:R.46, A:K.47, A:R.50 Metal complexes: A:H.182, H2O.5

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: D.55, G.73, D.75, S.77 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.55, A:D.55, A:S.77, H2O.3, H2O.4 CA.4: 5 residues within 4Å: Chain A: S.183, D.200, T.202, V.205, D.207 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.200, A:D.200, A:T.202, A:V.205, A:D.207

1 x BMA: beta-D-mannopyranose(Post Translational Modification)

BMA.5: 5 residues within 4Å: Chain A: P.236, G.237, S.337, L.338, A.339 3 PLIP interactions: 3 interactions with chain A Water bridges: A:G.237, A:L.338, A:A.339

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Houborg, K. et al., Impact of the Physical and Chemical Environment on the Molecular Structure of Coprinus Cinereus Peroxidase. Acta Crystallogr.,Sect.D (2003)

Release Date

2003-06-12

Peptides

Peroxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peroxidase

Related Entries With Identical Sequence