SMTL ID : 1h3n.1

LEUCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH A SULPHAMOYL ANALOGUE OF LEUCYL-ADENYLATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x LEU: LEUCINE(Non-covalent)

LEU.1: 11 residues within 4Å: Chain A: M.40, F.41, P.42, Y.43, D.80, S.504, Y.507, Y.535, H.541, H.545 Ligands: LMS.2 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:M.40, A:F.41, A:H.545 Hydrogen bonds: A:D.80, A:D.80

1 x LMS: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDRO-2-FURANYL]METHYL SULFAMATE(Non-covalent)

LMS.2: 19 residues within 4Å: Chain A: M.40, F.41, P.42, Y.43, H.49, G.51, H.52, N.55, Y.56, G.537, G.538, E.540, Q.574, G.575, M.576, V.577, V.637, M.638 Ligands: LEU.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:F.41, A:Y.43, A:Y.43, A:G.538, A:E.540, A:Q.574, A:V.577, A:V.577, A:M.638

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.439, C.442, C.484, C.487 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.439, A:C.442, A:C.484, A:C.487 ZN.4: 4 residues within 4Å: Chain A: C.159, C.162, C.176, H.179 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.159, A:C.162, A:C.176, A:H.179

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: L.714, E.715, G.716, R.719 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.716 Water bridges: A:R.719 Salt bridges: A:R.719 SO4.6: 4 residues within 4Å: Chain A: G.707, R.769, R.773, W.795 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.707, A:W.795 Water bridges: A:R.769 Salt bridges: A:R.769, A:R.773 SO4.7: 4 residues within 4Å: Chain A: F.246, T.247, T.248, Y.332 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.248, A:R.249, A:Y.332, A:Y.332 Water bridges: A:F.246, A:T.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cusack, S. et al., The 2A Structure of Leucyl-tRNA Synthetase and its Complex with a Leucyl-Adenylate Analogue. Embo J. (2000)

Release Date

2002-09-27

Peptides

LEUCYL-TRNA SYNTHETASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LEUCYL-TRNA SYNTHETASE

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