SMTL ID : 1h3u.1

CRYSTAL STRUCTURE OF THE HUMAN IGG1 FC-FRAGMENT,GLYCOFORM (M3N2F)2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- FUL: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-FUL.1: 9 residues within 4Å: Chain A: F.17, F.19, V.40, D.41, Y.72, N.73, R.77 Ligands: NAG-NAG-BMA-BMA-MAN-FUL.2, NAG-NAG-BMA-BMA-MAN-FUL.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.77, A:R.77

1 x NAG- NAG- BMA- BMA- MAN- FUL: beta-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA-MAN-FUL.2: 9 residues within 4Å: Chain B: F.17, F.19, V.40, D.41, Y.72, N.73, T.75, R.77 Ligands: NAG-NAG-BMA-MAN-MAN-FUL.1 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.73, B:R.77, B:R.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krapp, S. et al., Structural Analysis of Human Igg-Fc Glycoforms Reveals a Correlation between Glycosylation and Structural Integrity. J.Mol.Biol. (2003)

Release Date

2003-01-23

Peptides

IG GAMMA-1 CHAIN C REGION: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

IG GAMMA-1 CHAIN C REGION

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