SMTL ID : 1h3v.1

CRYSTAL STRUCTURE OF THE HUMAN IGG1 FC-FRAGMENT,GLYCOFORM (G2F)2,SG P212121

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- FUL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN-FUL.1: 17 residues within 4Å: Chain A: F.17, F.19, P.20, P.21, K.22, D.25, E.34, T.36, V.38, V.40, D.41, Y.72, N.73, T.75, R.77 Ligands: NAG-NAG-BMA-BMA-NAG-GAL-MAN-FUL.2, NAG-NAG-BMA-BMA-NAG-GAL-MAN-FUL.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.22, A:K.22, A:D.25, A:E.34, A:E.34, A:E.34, A:E.34, A:K.22 Water bridges: A:R.77

1 x NAG- NAG- BMA- BMA- NAG- GAL- MAN- FUL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-beta-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA-NAG-GAL-MAN-FUL.2: 16 residues within 4Å: Chain B: F.17, F.19, P.20, P.21, K.22, E.34, T.36, V.38, V.40, D.41, Y.72, N.73, T.75, R.77 Ligands: NAG-NAG-BMA-MAN-NAG-GAL-MAN-FUL.1, NAG-NAG-BMA-MAN-NAG-GAL-MAN-FUL.1 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.77, B:K.22, B:D.25, B:E.34, B:E.34, B:E.34, B:E.34, B:K.22, B:K.22, B:T.36 Water bridges: B:T.36, B:T.36, B:R.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krapp, S. et al., Structural Analysis of Human Igg-Fc Glycoforms Reveals a Correlation between Glycosylation and Structural Integrity. J.Mol.Biol. (2003)

Release Date

2003-01-23

Peptides

IG GAMMA-1 CHAIN C REGION: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

IG GAMMA-1 CHAIN C REGION

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