SMTL ID : 1h3w.1

Structural analysis of human IgG-Fc glycoforms reveals a correlation between glycosylation and structural integrity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- BMA- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-beta-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA-NAG-FUC.1: 10 residues within 4Å: Chain A: F.17, F.19, T.36, V.38, V.40, D.41, Y.72, N.73, R.77, V.79 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.77, A:R.77 Hydrophobic interactions: A:F.19 NAG-NAG-BMA-BMA-NAG-FUC.2: 10 residues within 4Å: Chain B: F.17, F.19, T.36, V.38, V.40, D.41, Y.72, N.73, R.77, V.79 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.77, B:R.77 Hydrophobic interactions: B:F.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krapp, S. et al., Structural Analysis of Human Igg-Fc Glycoforms Reveals a Correlation between Glycosylation and Structural Integrity. J.Mol.Biol. (2003)

Release Date

2003-01-23

Peptides

IG GAMMA-1 CHAIN C REGION: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
M

IG GAMMA-1 CHAIN C REGION

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