SMTL ID : 1h47.2 (1 other biounit)

Structures of MECP synthase in complex with (i) CMP and (ii) CMP and product

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

homo-trimer

Ligands

1 x GPP: GERANYL DIPHOSPHATE(Non-covalent)

GPP.1: 14 residues within 4Å: Chain A: F.9, G.140, F.141, R.144 Chain B: F.9, I.101, G.140, F.141, R.144, E.151 Chain C: F.9, G.140, F.141, R.144 14 PLIP interactions: 5 interactions with chain B, 4 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: B:F.9, B:I.101, A:F.141, C:F.9, C:F.141 Hydrogen bonds: B:F.141, A:F.141, C:F.141 Water bridges: B:G.140, A:R.144, C:R.144 Salt bridges: B:R.144, A:R.144, C:R.144

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: D.10, H.12, H.44 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.10, A:D.10, A:H.12, A:H.44 ZN.5: 3 residues within 4Å: Chain B: D.10, H.12, H.44 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.10, B:D.10, B:H.12 ZN.7: 3 residues within 4Å: Chain C: D.10, H.12, H.44 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.10, C:D.10, C:H.12, C:H.44, H2O.4

3 x C5P: CYTIDINE-5'-MONOPHOSPHATE(Non-covalent)

C5P.3: 12 residues within 4Å: Chain A: A.102, P.105, K.106, M.107, L.108, A.133, T.134, T.135, E.137 Chain C: D.58, I.59, G.60 14 PLIP interactions: 2 interactions with chain C, 12 interactions with chain A Hydrogen bonds: C:D.58, C:G.60, A:A.102, A:K.106, A:M.107, A:L.108, A:T.135, A:E.137, A:E.137, A:E.137 Hydrophobic interactions: A:A.133, A:T.135 Water bridges: A:A.133 pi-Cation interactions: A:K.106 C5P.4: 11 residues within 4Å: Chain A: D.58, I.59, G.60 Chain B: A.102, P.105, K.106, M.107, L.108, A.133, T.134, T.135 8 PLIP interactions: 2 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:D.58, A:G.60, B:A.102, B:M.107, B:L.108, B:T.135 Hydrophobic interactions: B:A.133, B:T.135 C5P.6: 11 residues within 4Å: Chain B: D.58, G.60 Chain C: A.102, P.105, K.106, M.107, L.108, A.133, T.134, T.135, E.137 11 PLIP interactions: 2 interactions with chain B, 9 interactions with chain C Hydrogen bonds: B:D.58, B:G.60, C:A.102, C:K.106, C:M.107, C:L.108, C:T.134, C:T.135, C:T.135, C:E.137 Hydrophobic interactions: C:T.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kemp, L.E. et al., The Identification of Isoprenoids that Bind in the Intersubunit Cavity of Escherichia Coli 2C-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase by Complementary Biophysical Methods. Acta Crystallogr.,Sect.D (2005)

Release Date

2004-10-22

Peptides

2C-METHYL-D-ERYTHRITOL-2,4-CYCLODIPHOSPHATE SYNTHASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

2C-METHYL-D-ERYTHRITOL-2,4-CYCLODIPHOSPHATE SYNTHASE

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