SMTL ID : 1h5w.1

2.1A Bacteriophage Phi-29 Connector

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-12-mer

Ligands

16 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 4 residues within 4Å: Chain A: K.214, N.215, W.218 Chain F: E.220 Ligand excluded by PLIP MPD.2: 6 residues within 4Å: Chain A: E.220, T.223 Chain B: Y.27, K.214, N.215, W.218 Ligand excluded by PLIP MPD.3: 5 residues within 4Å: Chain C: F.128, P.129, P.132 Chain G: R.22, N.29 Ligand excluded by PLIP MPD.4: 4 residues within 4Å: Chain B: E.220 Chain C: K.214, N.215, W.218 Ligand excluded by PLIP MPD.5: 4 residues within 4Å: Chain D: K.214, N.215, W.218 Chain L: E.220 Ligand excluded by PLIP MPD.6: 6 residues within 4Å: Chain D: E.220, T.223 Chain E: Y.27, K.214, N.215, W.218 Ligand excluded by PLIP MPD.7: 5 residues within 4Å: Chain A: R.22, N.29 Chain F: F.128, P.129, P.132 Ligand excluded by PLIP MPD.8: 4 residues within 4Å: Chain E: E.220 Chain F: K.214, N.215, W.218 Ligand excluded by PLIP MPD.9: 4 residues within 4Å: Chain C: E.220 Chain G: K.214, N.215, W.218 Ligand excluded by PLIP MPD.10: 6 residues within 4Å: Chain G: E.220, T.223 Chain H: Y.27, K.214, N.215, W.218 Ligand excluded by PLIP MPD.11: 5 residues within 4Å: Chain I: F.128, P.129, P.132 Chain J: R.22, N.29 Ligand excluded by PLIP MPD.12: 4 residues within 4Å: Chain H: E.220 Chain I: K.214, N.215, W.218 Ligand excluded by PLIP MPD.13: 4 residues within 4Å: Chain I: E.220 Chain J: K.214, N.215, W.218 Ligand excluded by PLIP MPD.14: 6 residues within 4Å: Chain J: E.220, T.223 Chain K: Y.27, K.214, N.215, W.218 Ligand excluded by PLIP MPD.15: 5 residues within 4Å: Chain D: R.22, N.29 Chain L: F.128, P.129, P.132 Ligand excluded by PLIP MPD.16: 4 residues within 4Å: Chain K: E.220 Chain L: K.214, N.215, W.218 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guasch, A. et al., Detailed Architecture of a DNA Translocating Machine: The High-Resolution Structure of the Bacteriophage Phi29 Connector Particle. J.Mol.Biol. (2002)

Release Date

2002-02-13

Peptides

UPPER COLLAR PROTEIN: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

UPPER COLLAR PROTEIN

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