SMTL ID : 1h6m.1

Covalent glycosyl-enzyme intermediate of hen egg white lysozyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

1 x G2F- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-deoxy-2-fluoro-alpha-D-glucopyranose(Post Translational Modification)

G2F-NAG.1: 12 residues within 4Å: Chain A: Q.35, N.46, D.52, Q.57, I.58, N.59, W.62, W.63, I.98, A.107, W.108, V.109 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.46, A:A.107, A:V.109, A:N.59, A:A.107 Water bridges: A:S.50, A:N.59 Hydrophobic interactions: A:I.98, A:W.108

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: S.60, C.64, N.65, S.72, R.73 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.72, A:R.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vocadlo, D.J. et al., Catalysis by Hen Egg-White Lysozyme Proceeds Via a Covalent Intermediate. Nature (2001)

Release Date

2001-08-30

Peptides

LYSOZYME C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LYSOZYME C

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