SMTL ID : 1h7z.1

Adenovirus Ad3 fibre head

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-trimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: N.117, T.120, H.121 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.117 Water bridges: A:T.120, A:T.120, A:H.121, A:H.121 Salt bridges: A:H.121 SO4.2: 3 residues within 4Å: Chain A: K.24, Q.25, N.26 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.25, A:N.26, A:N.26, A:N.26 Water bridges: A:K.24 Salt bridges: A:K.24 SO4.3: 5 residues within 4Å: Chain B: V.114, G.119, T.120, H.121, K.150 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.119, B:H.121 Water bridges: B:R.151 Salt bridges: B:H.121, B:K.150 SO4.4: 3 residues within 4Å: Chain B: K.24, Q.25, N.26 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.25, B:N.26, B:N.26 Salt bridges: B:K.24 SO4.5: 3 residues within 4Å: Chain B: S.52, D.53, Y.54 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.53, B:D.53, B:Y.54 Water bridges: B:A.51, B:S.52, B:S.52 SO4.6: 3 residues within 4Å: Chain C: K.24, Q.25, N.26 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.25, C:N.26, C:N.26 Salt bridges: C:K.24 SO4.7: 3 residues within 4Å: Chain C: K.60, T.176, Q.177 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.177, C:Q.177 Water bridges: C:T.175 Salt bridges: C:K.60 SO4.8: 1 residues within 4Å: Chain C: A.74 4 PLIP interactions: 4 interactions with chain C Water bridges: C:A.74, C:A.74, C:A.74, C:A.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Durmort, C. et al., Structure of the Fiber Head of Ad3, a Non-Car-Binding Serotype of Adenovirus. Virology (2001)

Release Date

2001-07-19

Peptides

ADENOVIRUS FIBRE PROTEIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

ADENOVIRUS FIBRE PROTEIN