SMTL ID : 1h82.2 (1 other biounit)

STRUCTURE OF POLYAMINE OXIDASE IN COMPLEX WITH GUAZATINE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- MAN- MAN- FCA: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-D-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-FCA.1: 4 residues within 4Å: Chain A: N.65, W.73, N.77, Y.197 No protein-ligand interaction detected (PLIP) NAG-NAG-MAN-MAN-FCA.4: 4 residues within 4Å: Chain B: N.65, W.73, N.77, Y.197 No protein-ligand interaction detected (PLIP)

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 39 residues within 4Å: Chain A: V.10, G.11, G.13, M.14, S.15, L.34, E.35, A.36, T.37, G.41, G.42, R.43, M.44, L.56, G.57, A.58, N.59, W.60, E.62, K.235, V.236, V.237, S.265, A.266, L.275, I.276, Y.298, W.393, F.398, Y.399, T.402, F.403, G.429, E.430, G.438, Y.439, V.440, A.443 Ligands: GZZ.3 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:R.43, A:W.393 Hydrogen bonds: A:A.12, A:G.13, A:S.15, A:S.15, A:S.15, A:G.16, A:A.36, A:G.41, A:R.43, A:A.58, A:N.59, A:W.60, A:W.60, A:V.237, A:V.237, A:Y.399, A:E.430, A:G.438, A:G.438, A:V.440 Water bridges: A:M.14, A:G.42, A:R.43, A:R.43, A:M.44, A:E.62, A:S.267 Salt bridges: A:R.43, A:R.43 pi-Stacking: A:F.403 FAD.5: 39 residues within 4Å: Chain B: V.10, G.11, G.13, M.14, S.15, L.34, E.35, A.36, T.37, G.41, G.42, R.43, M.44, L.56, G.57, A.58, N.59, W.60, E.62, K.235, V.236, V.237, S.265, A.266, L.275, I.276, Y.298, W.393, F.398, Y.399, T.402, F.403, G.429, E.430, G.438, Y.439, V.440, A.443 Ligands: GZZ.6 35 PLIP interactions: 35 interactions with chain B Hydrophobic interactions: B:R.43, B:W.393 Hydrogen bonds: B:A.12, B:G.13, B:S.15, B:S.15, B:S.15, B:G.16, B:A.36, B:G.41, B:R.43, B:A.58, B:N.59, B:W.60, B:W.60, B:E.62, B:V.237, B:V.237, B:Y.399, B:Y.399, B:E.430, B:G.438, B:G.438, B:V.440 Water bridges: B:M.14, B:G.42, B:R.43, B:R.43, B:M.44, B:E.62, B:S.267, B:H.441 Salt bridges: B:R.43, B:R.43 pi-Stacking: B:F.403

2 x GZZ: N-{8-[(8-{[(E)-AMINO(IMINO)METHYL]AMINO}OCTYL)AMINO]OCTYL}GUANIDINE(Non-covalent)

GZZ.3: 20 residues within 4Å: Chain A: W.60, E.62, F.89, Y.169, E.170, F.171, N.182, T.183, L.186, F.189, D.194, Y.298, F.403, S.404, N.405, W.406, N.437, G.438, Y.439 Ligands: FAD.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:W.60, A:W.60, A:F.89, A:F.171, A:F.403, A:F.403, A:F.403, A:Y.439 Hydrogen bonds: A:N.182, A:D.194, A:Y.298, A:N.405, A:W.406, A:N.437 Salt bridges: A:D.194 pi-Cation interactions: A:F.189 GZZ.6: 20 residues within 4Å: Chain B: W.60, E.62, F.89, Y.169, E.170, F.171, N.182, T.183, L.186, F.189, D.194, Y.298, F.403, S.404, N.405, W.406, N.437, G.438, Y.439 Ligands: FAD.5 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:W.60, B:W.60, B:F.89, B:F.171, B:F.403, B:F.403, B:F.403, B:Y.439 Hydrogen bonds: B:N.182, B:D.194, B:Y.298, B:N.405, B:W.406, B:N.437 Salt bridges: B:D.194 pi-Cation interactions: B:F.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Binda, C. et al., Structural Bases for Inhibitor Binding and Catalysis in Polyamine Oxidase. Biochemistry (2001)

Release Date

2001-01-31

Peptides

POLYAMINE OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

POLYAMINE OXIDASE

Related Entries With Identical Sequence