SMTL ID : 1h8g.1

C-terminal domain of the major autolysin (C-LytA) from Streptococcus pneumoniae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

12 x CHT: CHOLINE ION(Non-covalent)

CHT.1: 5 residues within 4Å: Chain A: W.38, W.45, Y.70, L.78 Chain D: D.89 4 PLIP interactions: 4 interactions with chain A pi-Cation interactions: A:W.38, A:W.38, A:W.45, A:W.45 CHT.2: 4 residues within 4Å: Chain A: W.18, W.25, Y.46, D.75 4 PLIP interactions: 4 interactions with chain A pi-Cation interactions: A:W.18, A:W.18, A:W.25, A:W.25 CHT.3: 4 residues within 4Å: Chain A: Y.6, F.8, M.14 Chain B: F.8 1 PLIP interactions: 1 interactions with chain B pi-Cation interactions: B:F.8 CHT.4: 5 residues within 4Å: Chain B: W.38, W.45, Y.70, L.78 Chain C: D.89 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C pi-Cation interactions: B:W.38, B:W.45 Hydrogen bonds: C:D.89 CHT.5: 8 residues within 4Å: Chain A: W.5, M.34, K.51, E.52 Chain B: W.5, Y.26, M.34, E.52 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:K.51 pi-Cation interactions: A:W.5, A:W.5, B:W.5, B:W.5 CHT.6: 3 residues within 4Å: Chain A: F.8 Chain B: Y.6, E.31 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:F.8 CHT.7: 5 residues within 4Å: Chain B: D.89 Chain C: W.38, W.45, Y.70, L.78 4 PLIP interactions: 4 interactions with chain C pi-Cation interactions: C:W.38, C:W.38, C:W.45, C:W.45 CHT.8: 4 residues within 4Å: Chain C: W.18, W.25, Y.46, D.75 4 PLIP interactions: 4 interactions with chain C pi-Cation interactions: C:W.18, C:W.18, C:W.25, C:W.25 CHT.9: 4 residues within 4Å: Chain C: Y.6, F.8, M.14 Chain D: F.8 1 PLIP interactions: 1 interactions with chain D pi-Cation interactions: D:F.8 CHT.10: 5 residues within 4Å: Chain A: D.89 Chain D: W.38, W.45, Y.70, L.78 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain A pi-Cation interactions: D:W.38, D:W.45 Hydrogen bonds: A:D.89, A:D.89 CHT.11: 8 residues within 4Å: Chain C: W.5, M.34, K.51, E.52 Chain D: W.5, Y.26, M.34, E.52 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:Y.26, C:K.51 pi-Cation interactions: D:W.5, D:W.5, C:W.5, C:W.5 CHT.12: 3 residues within 4Å: Chain C: F.8 Chain D: Y.6, E.31 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Water bridges: D:Y.6 pi-Cation interactions: C:F.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fernandez-Tornero, C. et al., A Novel Solenoid Fold in the Cell Wall Anchoring Domain of the Pneumococcal Virulence Factor Lyta. Nat.Struct.Biol. (2001)

Release Date

2002-01-31

Peptides

MAJOR AUTOLYSIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

MAJOR AUTOLYSIN