SMTL ID : 1h8t.2 (3 other biounits)

Echovirus 11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x DOA: 12-AMINO-DODECANOIC ACID(Non-covalent)

DOA.1: 10 residues within 4Å: Chain A: I.95, Y.146, M.181, I.183, Y.192, N.194, Y.210, M.216, I.219, F.240 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.95, A:Y.146, A:I.183, A:F.240 Hydrogen bonds: A:Y.210, A:Y.210 DOA.3: 10 residues within 4Å: Chain E: I.95, Y.146, M.181, I.183, Y.192, N.194, Y.210, M.216, I.219, F.240 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:I.95, E:Y.146, E:I.183, E:F.240 Hydrogen bonds: E:Y.210, E:Y.210 DOA.5: 10 residues within 4Å: Chain I: I.95, Y.146, M.181, I.183, Y.192, N.194, Y.210, M.216, I.219, F.240 6 PLIP interactions: 6 interactions with chain I Hydrophobic interactions: I:I.95, I:Y.146, I:I.183, I:F.240 Hydrogen bonds: I:Y.210, I:Y.210 DOA.7: 10 residues within 4Å: Chain M: I.95, Y.146, M.181, I.183, Y.192, N.194, Y.210, M.216, I.219, F.240 6 PLIP interactions: 6 interactions with chain M Hydrophobic interactions: M:I.95, M:Y.146, M:I.183, M:F.240 Hydrogen bonds: M:Y.210, M:Y.210 DOA.9: 10 residues within 4Å: Chain Q: I.95, Y.146, M.181, I.183, Y.192, N.194, Y.210, M.216, I.219, F.240 6 PLIP interactions: 6 interactions with chain Q Hydrophobic interactions: Q:I.95, Q:Y.146, Q:I.183, Q:F.240 Hydrogen bonds: Q:Y.210, Q:Y.210

5 x MYR: MYRISTIC ACID(Non-covalent)

MYR.2: 11 residues within 4Å: Chain D: G.1, A.2, I.29, Y.31 Chain H: T.27, N.28, I.29, Y.31 Chain O: L.2 Ligands: MYR.4, MYR.10 5 PLIP interactions: 2 interactions with chain D, 2 interactions with chain H, 1 interactions with chain O Hydrophobic interactions: D:I.29, H:N.28, H:I.29, O:L.2 Hydrogen bonds: D:A.2 MYR.4: 11 residues within 4Å: Chain H: G.1, A.2, I.29, Y.31 Chain L: T.27, N.28, I.29, Y.31 Chain S: L.2 Ligands: MYR.2, MYR.6 5 PLIP interactions: 2 interactions with chain L, 1 interactions with chain S, 2 interactions with chain H Hydrophobic interactions: L:N.28, L:I.29, S:L.2, H:I.29 Hydrogen bonds: H:A.2 MYR.6: 11 residues within 4Å: Chain C: L.2 Chain L: G.1, A.2, I.29, Y.31 Chain P: T.27, N.28, I.29, Y.31 Ligands: MYR.4, MYR.8 5 PLIP interactions: 2 interactions with chain L, 2 interactions with chain P, 1 interactions with chain C Hydrophobic interactions: L:I.29, P:N.28, P:I.29, C:L.2 Hydrogen bonds: L:A.2 MYR.8: 11 residues within 4Å: Chain G: L.2 Chain P: G.1, A.2, I.29, Y.31 Chain T: T.27, N.28, I.29, Y.31 Ligands: MYR.6, MYR.10 5 PLIP interactions: 2 interactions with chain P, 1 interactions with chain G, 2 interactions with chain T Hydrophobic interactions: P:I.29, G:L.2, T:N.28, T:I.29 Hydrogen bonds: P:A.2 MYR.10: 11 residues within 4Å: Chain D: T.27, N.28, I.29, Y.31 Chain K: L.2 Chain T: G.1, A.2, I.29, Y.31 Ligands: MYR.2, MYR.8 5 PLIP interactions: 1 interactions with chain K, 2 interactions with chain D, 2 interactions with chain T Hydrophobic interactions: K:L.2, D:N.28, D:I.29, T:I.29 Hydrogen bonds: T:A.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stuart, A. et al., Determination of the Structure of a Decay Accelerating Factor-Binding Clinical Isolate of Echovirus 11 Allows Mapping of Mutants with Altered Receptor Requirements for Infection. J.Virol. (2002)

Release Date

2002-07-11

Peptides

ECHOVIRUS 11 COAT PROTEIN VP1: AEIMQ
ECHOVIRUS 11 COAT PROTEIN VP2: BFJNR
ECHOVIRUS 11 COAT PROTEIN VP3: CGKOS
ECHOVIRUS 11 COAT PROTEIN VP4: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

B
B

F
B

J
B

N
B

R
B

C
C

G
C

K
C

O
C

S
C

D
D

H
D

L
D

P
D

T
D

ECHOVIRUS 11 COAT PROTEIN VP1

ECHOVIRUS 11 COAT PROTEIN VP2

ECHOVIRUS 11 COAT PROTEIN VP3

ECHOVIRUS 11 COAT PROTEIN VP4

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