SMTL ID : 1hd4.1

SOLUTION STRUCTURE OF THE A-SUBUNIT OF HUMAN CHORIONIC GONADOTROPIN [MODELED WITH DIANTENNARY GLYCAN AT ASN78]

Coordinates

PDB Format

Method

SOLUTION NMR

Oligo State

monomer

Ligands

4 x NAG: N-ACETYL-D-GLUCOSAMINE(Post Translational Modification)(Non-functional Binders)

NAG.1: 11 residues within 4Å: Chain A: L.12, A.23, P.24, I.25, L.26, N.66, V.68, N.78, H.79, T.80 Ligands: NAG.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.23, A:I.25, A:V.68 Hydrogen bonds: A:N.66, A:H.79 NAG.2: 5 residues within 4Å: Chain A: P.24 Ligands: NAG.1, BMA.3, MAN.4, MAN.5 No protein-ligand interaction detected (PLIP) NAG.6: 3 residues within 4Å: Ligands: BMA.3, MAN.5, GAL.9 No protein-ligand interaction detected (PLIP) NAG.7: 2 residues within 4Å: Ligands: MAN.4, GAL.8 No protein-ligand interaction detected (PLIP)

1 x BMA: BETA-D-MANNOSE(Non-functional Binders)

BMA.3: 4 residues within 4Å: Ligands: NAG.2, MAN.4, MAN.5, NAG.6 No protein-ligand interaction detected (PLIP)

2 x MAN: ALPHA-D-MANNOSE(Non-functional Binders)

MAN.4: 3 residues within 4Å: Ligands: NAG.2, BMA.3, NAG.7 No protein-ligand interaction detected (PLIP) MAN.5: 3 residues within 4Å: Ligands: NAG.2, BMA.3, NAG.6 No protein-ligand interaction detected (PLIP)

2 x GAL: BETA-D-GALACTOSE(Non-functional Binders)

GAL.8: 1 residues within 4Å: Ligands: NAG.7 No protein-ligand interaction detected (PLIP) GAL.9: 1 residues within 4Å: Ligands: NAG.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Erbel, P.J.A. et al., Effects of the N-Linked Glycans on the 3D Structure of the Free A-Subunit of Human Chorionic Gonadotropin. Biochemistry (2000)

Release Date

2000-12-07

Peptides

CHORIONIC GONADOTROPIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CHORIONIC GONADOTROPIN

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