SMTL ID : 1hdx.1

THREE-DIMENSIONAL STRUCTURES OF THREE HUMAN ALCOHOL DEHYDROGENASE VARIANTS: CORRELATIONS WITH THEIR FUNCTIONAL DIFFERENCES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.97, G.98, C.100, C.103, C.111, L.112 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.97, A:C.100, A:C.103, A:C.111 ZN.2: 5 residues within 4Å: Chain A: C.46, T.48, H.67, C.174 Ligands: NAD.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.46, A:H.67, A:C.174 ZN.5: 4 residues within 4Å: Chain B: C.97, C.100, C.103, C.111 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.97, B:C.100, B:C.103, B:C.111 ZN.6: 5 residues within 4Å: Chain B: C.46, T.48, H.67, C.174 Ligands: NAD.8 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.46, B:H.67, B:C.174

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.3: 32 residues within 4Å: Chain A: C.46, R.47, T.48, H.51, F.93, C.174, T.178, G.199, L.200, G.201, G.202, V.203, G.204, D.223, I.224, N.225, K.228, V.268, I.269, G.270, R.271, T.274, V.292, G.293, V.294, A.317, V.318, Y.319, L.362, R.369 Ligands: ZN.2, CXL.4 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:T.178 Hydrogen bonds: A:R.47, A:H.51, A:T.178, A:L.200, A:L.200, A:V.203, A:G.204, A:I.224, A:K.228, A:I.269, A:R.271, A:V.292, A:V.294, A:Y.319 Water bridges: A:G.201, A:G.201, A:G.202, A:N.225, A:N.225, A:R.369 Salt bridges: A:R.47, A:R.369 NAD.8: 28 residues within 4Å: Chain A: L.309 Chain B: C.46, R.47, T.48, H.51, F.93, C.174, T.178, G.199, L.200, G.201, G.202, V.203, D.223, I.224, K.228, V.268, I.269, R.271, V.292, G.293, V.294, A.317, V.318, Y.319, R.369 Ligands: ZN.6, CXL.9 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:T.178 Hydrogen bonds: B:R.47, B:H.51, B:L.200, B:L.200, B:G.202, B:V.203, B:I.224, B:K.228, B:K.228, B:I.269, B:R.271, B:V.294, B:A.317, B:Y.319 Water bridges: B:G.201, B:G.201, B:N.225, B:R.271, B:I.368 Salt bridges: B:R.47, B:R.369

2 x CXL: CYCLOHEXANOL(Non-covalent)

CXL.4: 6 residues within 4Å: Chain A: T.48, L.57, F.93, L.116, V.318 Ligands: NAD.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.48, A:L.57, A:L.116, A:V.318 CXL.9: 4 residues within 4Å: Chain A: M.306 Chain B: L.116, V.318 Ligands: NAD.8 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.116, B:L.116, B:V.318

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 1 residues within 4Å: Chain B: R.128 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hurley, T.D. et al., Structures of three human beta alcohol dehydrogenase variants. Correlations with their functional differences. J.Mol.Biol. (1994)

Release Date

1994-01-31

Peptides

ALCOHOL DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ALCOHOL DEHYDROGENASE

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