SMTL ID : 1hhq.1

Role of active site resiude Lys16 in Nucleoside Diphosphate Kinase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-hexamer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.92, T.98, R.109 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.92, A:R.92, A:G.123 Salt bridges: A:R.92, A:R.109 SO4.2: 3 residues within 4Å: Chain B: R.92, T.98, R.109 5 PLIP interactions: 5 interactions with chain B Water bridges: B:R.92, B:R.92, B:G.123 Salt bridges: B:R.92, B:R.109 SO4.3: 3 residues within 4Å: Chain C: R.92, T.98, R.109 5 PLIP interactions: 5 interactions with chain C Water bridges: C:R.92, C:R.92, C:G.123 Salt bridges: C:R.92, C:R.109 SO4.4: 3 residues within 4Å: Chain D: R.92, T.98, R.109 6 PLIP interactions: 6 interactions with chain D Water bridges: D:R.92, D:R.92, D:T.98, D:G.123 Salt bridges: D:R.92, D:R.109 SO4.5: 3 residues within 4Å: Chain E: R.92, T.98, R.109 6 PLIP interactions: 6 interactions with chain E Water bridges: E:R.92, E:R.92, E:T.98, E:G.123 Salt bridges: E:R.92, E:R.109 SO4.6: 3 residues within 4Å: Chain F: R.92, T.98, R.109 6 PLIP interactions: 6 interactions with chain F Water bridges: F:R.92, F:R.92, F:T.98, F:G.123 Salt bridges: F:R.92, F:R.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schneider, B. et al., Mechanism of Phosphoryl Transfer by Nucleoside Diphosphate Kinase Ph-Dependence and Role of Active Site Lys16 and Tyr56 Residues. Eur.J.Biochem. (2001)

Release Date

2001-05-31

Peptides

NUCLEOSIDE DIPHOSPHATE KINASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

NUCLEOSIDE DIPHOSPHATE KINASE