SMTL ID : 1hiv.1

CRYSTAL STRUCTURE OF A COMPLEX OF HIV-1 PROTEASE WITH A DIHYDROETHYLENE-CONTAINING INHIBITOR: COMPARISONS WITH MOLECULAR MODELING

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x 1ZK: 4-[(2R)-3-{[(1S,2S,3R,4S)-1-(cyclohexylmethyl)-2,3-dihydroxy-5-methyl-4-({(1S,2R)-2-methyl-1-[(pyridin-2-ylmethyl)carba moyl]butyl}carbamoyl)hexyl]amino}-2-{[(naphthalen-1-yloxy)acetyl]amino}-3-oxopropyl]-1H-imidazol-3-ium(Non-covalent)

1ZK.1: 26 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, G.48, G.49, I.50, P.81, V.82, I.84 25 PLIP interactions: 11 interactions with chain B, 14 interactions with chain A Hydrophobic interactions: B:L.23, B:A.28, B:I.50, B:P.81, B:V.82, A:L.23, A:I.50, A:P.81, A:P.81, A:V.82 Hydrogen bonds: B:D.25, B:G.27, B:D.29, B:G.48, A:G.27, A:D.29, A:D.30, A:D.30, A:G.48 Water bridges: B:G.48, B:G.48, A:G.48, A:G.48, A:I.50, A:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thanki, N. et al., Crystal structure of a complex of HIV-1 protease with a dihydroxyethylene-containing inhibitor: comparisons with molecular modeling. Protein Sci. (1992)

Release Date

1993-10-31

Peptides

HIV-1 PROTEASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 PROTEASE

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