- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEC: HEME C(Covalent)
- 2 x DHE: HEME D(Covalent)(Non-covalent)
DHE.2: 25 residues within 4Å:- Chain A: Y.25, E.26, P.27, S.28, M.106, R.174, H.200, I.201, R.203, R.216, R.243, S.244, I.245, Y.263, A.301, A.302, I.303, H.345, R.391, F.444, Q.507, W.522, T.554, G.555, F.557
36 PLIP interactions:36 interactions with chain A,- Hydrophobic interactions: A:Y.25, A:Y.25, A:I.201, A:R.243, A:R.243, A:F.444, A:F.444, A:W.522, A:W.522, A:T.554, A:F.557
- Hydrogen bonds: A:S.28, A:I.245, A:Y.263, A:Y.263, A:I.303, A:Q.507
- Water bridges: A:R.203, A:R.203, A:R.203, A:R.203, A:K.446, A:K.446, A:K.446, A:G.555
- Salt bridges: A:R.174, A:H.200, A:H.200, A:R.203, A:R.203, A:R.216, A:R.243, A:R.391, A:K.446
- Metal complexes: A:Y.25, A:H.200
DHE.6: 23 residues within 4Å:- Chain B: E.26, P.27, S.28, R.174, H.200, I.201, R.203, R.216, R.243, S.244, I.245, Y.263, A.301, A.302, I.303, H.345, R.391, F.444, Q.507, W.522, G.555, F.557
- Ligands: OXY.7
30 PLIP interactions:30 interactions with chain B,- Hydrophobic interactions: B:I.201, B:R.243, B:R.243, B:F.444, B:F.444, B:W.522, B:F.557
- Hydrogen bonds: B:S.28, B:I.245, B:Y.263, B:I.303, B:Q.507
- Water bridges: B:R.203, B:R.203, B:R.203, B:R.203, B:K.446, B:K.446, B:K.446
- Salt bridges: B:R.174, B:H.200, B:H.200, B:R.203, B:R.203, B:R.216, B:R.216, B:R.243, B:R.391, B:K.446
- Metal complexes: B:H.200
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 5 residues within 4Å:- Chain A: F.395, V.396, P.449, S.451, I.475
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.396, A:P.449
- Water bridges: A:S.451
GOL.8: 5 residues within 4Å:- Chain B: S.28, D.30, R.174, Y.197, R.216
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.28, B:R.174, B:R.174, B:Y.197, B:R.216
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 3 residues within 4Å:- Chain A: Y.308, R.354, K.372
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:R.354, A:K.372
SO4.9: 3 residues within 4Å:- Chain B: Y.308, R.354, K.372
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:Y.308
- Water bridges: B:R.354, B:R.354, B:R.354, B:R.354
- Salt bridges: B:R.354, B:K.372
SO4.10: 3 residues within 4Å:- Chain B: G.439, G.440, N.461
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.440, B:N.461
- Water bridges: B:D.412
- 1 x OXY: OXYGEN MOLECULE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sjogren, T. et al., Structure of the bound dioxygen species in the cytochrome oxidase reaction of cytochrome cd1 nitrite reductase. J. Biol. Chem. (2001)
- Release Date
- 2001-01-16
- Peptides
- Nitrite reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEC: HEME C(Covalent)
- 2 x DHE: HEME D(Covalent)(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 1 x OXY: OXYGEN MOLECULE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sjogren, T. et al., Structure of the bound dioxygen species in the cytochrome oxidase reaction of cytochrome cd1 nitrite reductase. J. Biol. Chem. (2001)
- Release Date
- 2001-01-16
- Peptides
- Nitrite reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B