SMTL ID : 1hl9.1

CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA ALPHA-FUCOSIDASE IN COMPLEX WITH A MECHANISM BASED INHIBITOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-hexamer

Ligands

6 x FUF: 2-deoxy-2-fluoro-beta-L-fucopyranose(Non-covalent)

FUF.1: 11 residues within 4Å: Chain A: F.32, H.34, E.66, W.67, H.128, H.129, Y.171, D.224, R.254, E.266, F.290 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.32, A:F.290 Hydrogen bonds: A:W.67, A:H.128, A:Y.171, A:D.224 Salt bridges: A:R.254 FUF.2: 13 residues within 4Å: Chain B: F.32, H.34, Y.64, E.66, W.67, H.128, H.129, Y.171, D.224, M.225, R.254, E.266, F.290 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.32, B:F.290 Hydrogen bonds: B:E.66, B:W.67, B:H.128 Salt bridges: B:R.254 FUF.3: 11 residues within 4Å: Chain C: F.32, H.34, E.66, W.67, H.128, H.129, Y.171, D.224, R.254, E.266, F.290 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:F.32, C:F.290 Hydrogen bonds: C:W.67, C:H.128, C:Y.171, C:D.224 Salt bridges: C:R.254 FUF.4: 13 residues within 4Å: Chain D: F.32, H.34, Y.64, E.66, W.67, H.128, H.129, Y.171, D.224, M.225, R.254, E.266, F.290 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:F.32, D:F.290 Hydrogen bonds: D:E.66, D:W.67, D:H.128 Salt bridges: D:R.254 FUF.5: 11 residues within 4Å: Chain E: F.32, H.34, E.66, W.67, H.128, H.129, Y.171, D.224, R.254, E.266, F.290 7 PLIP interactions: 7 interactions with chain E Hydrophobic interactions: E:F.32, E:F.290 Hydrogen bonds: E:W.67, E:H.128, E:Y.171, E:D.224 Salt bridges: E:R.254 FUF.6: 13 residues within 4Å: Chain F: F.32, H.34, Y.64, E.66, W.67, H.128, H.129, Y.171, D.224, M.225, R.254, E.266, F.290 6 PLIP interactions: 6 interactions with chain F Hydrophobic interactions: F:F.32, F:F.290 Hydrogen bonds: F:E.66, F:W.67, F:H.128 Salt bridges: F:R.254

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sulzenbacher, G. et al., Crystal Structure of Thermotoga Maritima {Alpha}-L-Fucosidase: Insights Into the Catalytic Mechanism and the Molecular Basis for Fucosidosis. J.Biol.Chem. (2004)

Release Date

2004-02-05

Peptides

PUTATIVE ALPHA-L-FUCOSIDASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

PUTATIVE ALPHA-L-FUCOSIDASE

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