- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-octamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 8 x PXP: PYRIDOXINE-5'-PHOSPHATE(Non-covalent)
PXP.2: 17 residues within 4Å:- Chain A: N.8, E.71, C.91, V.93, T.101, T.102, F.132, E.152, G.191, H.192, G.193, N.212, I.213, G.214, H.215
- Chain E: R.19
- Ligands: PO4.1
16 PLIP interactions:14 interactions with chain A, 2 interactions with chain E- Hydrophobic interactions: A:V.93, A:F.132
- Hydrogen bonds: A:T.101, A:T.101, A:T.102, A:H.192, A:G.193, A:G.214, A:H.215, E:R.19
- Water bridges: A:L.194, A:L.194, A:A.216, A:A.216
- Salt bridges: A:H.192, E:R.19
PXP.4: 15 residues within 4Å:- Chain B: N.8, E.71, V.93, T.102, F.132, E.152, G.191, H.192, G.193, N.212, I.213, G.214, H.215
- Chain G: R.19
- Ligands: PO4.3
15 PLIP interactions:2 interactions with chain G, 13 interactions with chain B- Water bridges: G:R.19, B:H.192, B:L.194, B:A.216, B:A.216
- Salt bridges: G:R.19, B:H.192
- Hydrophobic interactions: B:V.93, B:T.102
- Hydrogen bonds: B:G.191, B:G.193, B:N.212, B:G.214, B:H.215
- pi-Stacking: B:H.192
PXP.6: 14 residues within 4Å:- Chain C: E.71, C.91, V.93, T.102, F.132, E.152, H.192, G.193, N.212, I.213, G.214, H.215
- Chain F: R.19
- Ligands: PO4.5
14 PLIP interactions:13 interactions with chain C, 1 interactions with chain F- Hydrophobic interactions: C:V.93, C:F.132
- Hydrogen bonds: C:N.8, C:H.44, C:T.102, C:G.193, C:G.214, C:H.215
- Water bridges: C:H.192, C:L.194, C:A.216, C:A.216
- Salt bridges: C:H.192, F:R.19
PXP.7: 15 residues within 4Å:- Chain D: N.8, D.10, E.71, C.91, V.93, F.132, E.152, G.191, H.192, G.193, N.212, I.213, G.214, H.215
- Chain H: R.19
15 PLIP interactions:12 interactions with chain D, 3 interactions with chain H- Hydrophobic interactions: D:V.93, D:F.132
- Hydrogen bonds: D:D.10, D:G.193, D:G.214, D:H.215
- Water bridges: D:E.71, D:L.194, D:L.194, D:A.216, D:A.216, H:R.19, H:R.19
- Salt bridges: D:H.192, H:R.19
PXP.9: 17 residues within 4Å:- Chain A: R.19
- Chain E: N.8, E.71, C.91, V.93, T.101, T.102, F.132, E.152, G.191, H.192, G.193, N.212, I.213, G.214, H.215
- Ligands: PO4.8
14 PLIP interactions:13 interactions with chain E, 1 interactions with chain A- Hydrophobic interactions: E:V.93, E:F.132
- Hydrogen bonds: E:T.101, E:T.102, E:H.192, E:G.193, E:G.214, E:H.215
- Water bridges: E:L.194, E:L.194, E:A.216, E:A.216
- Salt bridges: E:H.192, A:R.19
PXP.11: 15 residues within 4Å:- Chain C: R.19
- Chain F: N.8, E.71, V.93, T.102, F.132, E.152, G.191, H.192, G.193, N.212, I.213, G.214, H.215
- Ligands: PO4.10
15 PLIP interactions:13 interactions with chain F, 2 interactions with chain C- Hydrophobic interactions: F:V.93, F:T.102
- Hydrogen bonds: F:G.191, F:G.193, F:N.212, F:G.214, F:H.215
- Water bridges: F:H.192, F:L.194, F:A.216, F:A.216, C:R.19
- Salt bridges: F:H.192, C:R.19
- pi-Stacking: F:H.192
PXP.13: 14 residues within 4Å:- Chain B: R.19
- Chain G: E.71, C.91, V.93, T.102, F.132, E.152, H.192, G.193, N.212, I.213, G.214, H.215
- Ligands: PO4.12
13 PLIP interactions:12 interactions with chain G, 1 interactions with chain B- Hydrophobic interactions: G:V.93, G:F.132
- Hydrogen bonds: G:N.8, G:T.102, G:G.193, G:G.214, G:H.215
- Water bridges: G:H.192, G:L.194, G:A.216, G:A.216
- Salt bridges: G:H.192, B:R.19
PXP.14: 15 residues within 4Å:- Chain D: R.19
- Chain H: N.8, D.10, E.71, C.91, V.93, F.132, E.152, G.191, H.192, G.193, N.212, I.213, G.214, H.215
16 PLIP interactions:13 interactions with chain H, 3 interactions with chain D- Hydrophobic interactions: H:V.93, H:F.132
- Hydrogen bonds: H:D.10, H:D.10, H:G.193, H:G.214, H:H.215
- Water bridges: H:H.44, H:L.194, H:L.194, H:A.216, H:A.216, D:R.19, D:R.19
- Salt bridges: H:H.192, D:R.19
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Franco, M.G. et al., Structural basis for the function of pyridoxine 5'-phosphate synthase. Structure (2001)
- Release Date
- 2001-03-28
- Peptides
- PYRIDOXINE 5'-PHOSPHATE SYNTHASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-octamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 8 x PXP: PYRIDOXINE-5'-PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Franco, M.G. et al., Structural basis for the function of pyridoxine 5'-phosphate synthase. Structure (2001)
- Release Date
- 2001-03-28
- Peptides
- PYRIDOXINE 5'-PHOSPHATE SYNTHASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
D