SMTL ID : 1hp1.1

5'-NUCLEOTIDASE (OPEN FORM) COMPLEX WITH ATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: D.16, H.18, D.59, Q.229 Ligands: ZN.2, CO3.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.16, A:H.18, A:D.59 ZN.2: 7 residues within 4Å: Chain A: D.16, D.59, N.91, H.192, H.227 Ligands: ZN.1, CO3.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.59, A:H.192, A:H.227

1 x CO3: CARBONATE ION(Non-functional Binders)

CO3.3: 11 residues within 4Å: Chain A: D.16, D.59, N.91, H.92, H.227, Q.229, N.483, T.484, G.485 Ligands: ZN.1, ZN.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.91 Water bridges: A:Q.229, A:Q.229, A:Q.229, A:N.483

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: W.22, R.23 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.22 Water bridges: A:Q.319, A:Q.319 Salt bridges: A:R.23 SO4.5: 3 residues within 4Å: Chain A: E.307, N.308, Q.309 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.307, A:Q.309 Water bridges: A:N.308, A:N.308, A:N.308, A:N.308, A:Q.310 SO4.6: 2 residues within 4Å: Chain A: G.123, R.165 5 PLIP interactions: 5 interactions with chain A Water bridges: A:G.123, A:R.165, A:R.165, A:R.165 Salt bridges: A:R.165

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.7: 11 residues within 4Å: Chain A: R.341, R.345, S.371, G.373, G.374, R.376, F.395, N.397, G.424, F.464, D.470 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:R.345, A:R.345, A:R.376, A:N.397, A:D.470 Water bridges: A:S.371, A:F.395 Salt bridges: A:R.341, A:R.341, A:R.345, A:R.376 pi-Stacking: A:F.395, A:F.395, A:F.464

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Knofel, T. et al., Mechanism of hydrolysis of phosphate esters by the dimetal center of 5'-nucleotidase based on crystal structures. J.Mol.Biol. (2001)

Release Date

2002-03-20

Peptides

5'-NUCLEOTIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

5'-NUCLEOTIDASE