SMTL ID : 1hr8.5 (4 other biounits)

Yeast Mitochondrial Processing Peptidase beta-E73Q Mutant Complexed with Cytochrome C Oxidase IV Signal Peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-4-4-4-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain B: H.51, H.55, E.131 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.51, B:H.55, B:E.131, B:E.131, H2O.1 ZN.3: 3 residues within 4Å: Chain E: H.51, H.55, E.131 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.51, E:H.55, E:E.131, E:E.131, H2O.1 ZN.4: 3 residues within 4Å: Chain G: H.51, H.55, E.131 5 PLIP interactions: 4 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:H.51, G:H.55, G:E.131, G:E.131, H2O.1 ZN.6: 3 residues within 4Å: Chain I: H.51, H.55, E.131 5 PLIP interactions: 4 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:H.51, I:H.55, I:E.131, I:E.131, H2O.1

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 6 residues within 4Å: Chain D: W.134, P.162, R.163 Chain F: W.134, P.162, R.163 6 PLIP interactions: 3 interactions with chain F, 3 interactions with chain D Hydrogen bonds: F:R.163, D:R.163 pi-Cation interactions: F:W.134, F:W.134, D:W.134, D:W.134 EPE.5: 6 residues within 4Å: Chain A: W.134, P.162, R.163 Chain H: W.134, P.162, R.163 5 PLIP interactions: 2 interactions with chain H, 3 interactions with chain A Hydrogen bonds: H:R.163, A:R.163 pi-Cation interactions: H:W.134, A:W.134, A:W.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taylor, A.B. et al., Crystal structures of mitochondrial processing peptidase reveal the mode for specific cleavage of import signal sequences. Structure (2001)

Release Date

2001-07-11

Peptides

MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT: ADFH
MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT: BEGI
CYTOCHROME C OXIDASE POLYPEPTIDE IV: CJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

D
A

F
E

H
G

B
D

E
B

G
F

I
H

C
P

J
O

K
Q

L
R

MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT

MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT

CYTOCHROME C OXIDASE POLYPEPTIDE IV

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