- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- 10 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
NAG.2: 3 residues within 4Å:- Chain A: Y.23, N.36
- Ligands: NAG.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.23, A:N.36
NAG.3: 2 residues within 4Å:- Chain A: Y.6
- Ligands: NAG.2
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.6
NAG.4: 6 residues within 4Å:- Chain A: E.108, N.112, Y.115, F.188
- Chain B: L.206
- Ligands: NAG.9
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.112, A:N.112
- Water bridges: A:S.114, B:L.206
NAG.5: 6 residues within 4Å:- Chain A: Y.370, Q.374, N.378, M.381, D.384, Y.385
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:Q.374
- Hydrogen bonds: A:N.378
NAG.6: 3 residues within 4Å:- Chain A: E.207, Y.210
- Ligands: NAG.14
No protein-ligand interaction detected (PLIP)NAG.9: 2 residues within 4Å:- Chain B: E.207
- Ligands: NAG.4
No protein-ligand interaction detected (PLIP)NAG.12: 3 residues within 4Å:- Chain B: Y.23, N.36
- Ligands: NAG.13
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.23, B:N.36, B:T.38
NAG.13: 2 residues within 4Å:- Chain B: Y.6
- Ligands: NAG.12
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Y.6
NAG.14: 6 residues within 4Å:- Chain A: L.206
- Chain B: E.108, N.112, Y.115, F.188
- Ligands: NAG.6
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:N.112, B:Y.115, A:Y.210, A:Y.210
- Water bridges: B:S.114, A:L.206
NAG.15: 6 residues within 4Å:- Chain B: Y.370, Q.374, N.378, M.381, D.384, Y.385
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.370, B:Q.374, B:N.378, B:D.384
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.7: 18 residues within 4Å:- Chain A: A.167, A.170, Q.171, T.174, H.175, F.178, K.179, T.180, L.263, N.350, Y.353, H.354, W.355, H.356, M.359, I.412, V.415, D.418
16 PLIP interactions:16 interactions with chain A,- Hydrophobic interactions: A:A.170, A:Q.171, A:F.178, A:L.263, A:W.355, A:I.412, A:V.415
- Hydrogen bonds: A:F.178, A:T.180, A:N.350, A:D.418, A:D.418
- pi-Stacking: A:H.175, A:H.175, A:H.354
- Metal complexes: A:H.356
HEM.16: 18 residues within 4Å:- Chain B: A.167, A.170, Q.171, T.174, H.175, F.178, K.179, T.180, L.263, N.350, Y.353, H.354, W.355, H.356, M.359, I.412, V.415, D.418
17 PLIP interactions:17 interactions with chain B,- Hydrophobic interactions: B:A.170, B:Q.171, B:F.178, B:F.178, B:L.263, B:W.355, B:I.412, B:V.415
- Hydrogen bonds: B:F.178, B:T.180, B:T.180, B:N.350, B:D.418
- pi-Stacking: B:H.175, B:H.175, B:H.354
- Metal complexes: B:H.356
- 2 x FL2: FLURBIPROFEN METHYL ESTER(Non-covalent)
FL2.8: 14 residues within 4Å:- Chain A: V.84, R.88, V.317, L.320, Y.323, L.327, Y.353, W.355, M.490, I.491, G.494, A.495, S.498, L.499
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:V.317, A:L.320, A:Y.323, A:L.327, A:Y.353, A:W.355, A:W.355, A:A.495
- Hydrogen bonds: A:Y.323
- Salt bridges: A:R.88
FL2.17: 14 residues within 4Å:- Chain B: V.84, R.88, V.317, L.320, Y.323, L.327, Y.353, W.355, M.490, I.491, G.494, A.495, S.498, L.499
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:V.84, B:V.317, B:L.320, B:Y.323, B:L.327, B:Y.353, B:W.355, B:W.355, B:I.491, B:A.495
- Salt bridges: B:R.88
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Selinsky, B.S. et al., Structural analysis of NSAID binding by prostaglandin H2 synthase: time-dependent and time-independent inhibitors elicit identical enzyme conformations. Biochemistry (2001)
- Release Date
- 2001-04-11
- Peptides
- PROSTAGLANDIN H2 SYNTHASE-1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- 10 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x FL2: FLURBIPROFEN METHYL ESTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Selinsky, B.S. et al., Structural analysis of NSAID binding by prostaglandin H2 synthase: time-dependent and time-independent inhibitors elicit identical enzyme conformations. Biochemistry (2001)
- Release Date
- 2001-04-11
- Peptides
- PROSTAGLANDIN H2 SYNTHASE-1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B