SMTL ID : 1htb.1

CRYSTALLIZATION OF HUMAN BETA3 ALCOHOL DEHYDROGENASE (10 MG/ML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ AND 1 MM 4-IODOPYRAZOLE AT 25 C

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.97, G.98, C.100, C.103, C.111 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.97, A:C.100, A:C.103, A:C.111 ZN.2: 6 residues within 4Å: Chain A: C.46, T.48, H.67, C.174 Ligands: NAD.3, PYZ.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.46, A:H.67, A:C.174 ZN.5: 5 residues within 4Å: Chain B: C.97, G.98, C.100, C.103, C.111 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.97, B:C.100, B:C.103, B:C.111 ZN.6: 6 residues within 4Å: Chain B: C.46, T.48, H.67, C.174 Ligands: NAD.8, PYZ.9 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.46, B:H.67, B:C.174

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.3: 29 residues within 4Å: Chain A: C.46, R.47, T.48, H.51, F.93, C.174, T.178, G.199, L.200, G.201, G.202, V.203, D.223, I.224, N.225, K.228, V.268, I.269, R.271, T.274, V.292, G.293, V.294, A.317, V.318, Y.319, L.362 Ligands: ZN.2, PYZ.4 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:T.178 Hydrogen bonds: A:R.47, A:H.51, A:T.178, A:L.200, A:L.200, A:V.203, A:I.224, A:I.269, A:R.271, A:V.292, A:V.294, A:Y.319 Water bridges: A:G.201, A:G.201, A:G.202, A:G.202, A:G.202, A:G.202, A:R.271, A:G.320 Salt bridges: A:R.47, A:K.228 NAD.8: 29 residues within 4Å: Chain B: C.46, R.47, T.48, H.51, F.93, C.174, T.178, G.199, L.200, G.201, G.202, V.203, D.223, I.224, N.225, K.228, V.268, I.269, R.271, T.274, V.292, G.293, V.294, A.317, V.318, Y.319, L.362 Ligands: ZN.6, PYZ.9 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:T.178 Hydrogen bonds: B:R.47, B:H.51, B:L.200, B:V.203, B:I.224, B:K.228, B:I.269, B:R.271, B:V.294, B:A.317, B:Y.319 Water bridges: B:R.47, B:G.201, B:G.201, B:G.202, B:G.202, B:G.202, B:G.202, B:K.228, B:G.320 Salt bridges: B:R.47

2 x PYZ: 4-IODOPYRAZOLE(Non-covalent)

PYZ.4: 8 residues within 4Å: Chain A: C.46, T.48, H.67, F.93, L.116, C.174 Ligands: ZN.2, NAD.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.48 PYZ.9: 9 residues within 4Å: Chain B: C.46, T.48, H.67, F.93, L.116, L.141, C.174 Ligands: ZN.6, NAD.8 1 PLIP interactions: 1 interactions with chain B pi-Stacking: B:F.93

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 1 residues within 4Å: Chain B: R.128 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davis, G.J. et al., X-ray structure of human beta3beta3 alcohol dehydrogenase. The contribution of ionic interactions to coenzyme binding. J.Biol.Chem. (1996)

Release Date

1995-12-07

Peptides

BETA3 ALCOHOL DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

BETA3 ALCOHOL DEHYDROGENASE