SMTL ID : 1huq.1

1.8A CRYSTAL STRUCTURE OF THE MONOMERIC GTPASE RAB5C (MOUSE)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: S.17, T.35, D.58 Ligands: GNP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.17, A:T.35, H2O.3, H2O.3

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 24 residues within 4Å: Chain A: E.11, S.12, A.13, V.14, G.15, K.16, S.17, S.18, F.28, H.29, E.30, Q.32, S.34, T.35, A.60, G.61, N.116, K.117, D.119, L.120, S.146, A.147, K.148 Ligands: MG.1 31 PLIP interactions: 31 interactions with chain A Hydrogen bonds: A:S.12, A:A.13, A:V.14, A:G.15, A:K.16, A:K.16, A:S.17, A:S.18, A:S.18, A:H.29, A:T.35, A:G.61, A:N.116, A:K.117, A:K.117, A:A.147, A:K.148 Water bridges: A:S.17, A:S.17, A:E.30, A:E.30, A:Q.32, A:T.35, A:T.35, A:Q.62, A:Q.62, A:K.148 Salt bridges: A:E.30, A:D.119 pi-Stacking: A:F.28, A:F.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Merithew, E. et al., Structural plasticity of an invariant hydrophobic triad in the switch regions of Rab GTPases is a determinant of effector recognition. J.Biol.Chem. (2001)

Release Date

2001-02-07

Peptides

RAB5C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RAB5C