SMTL ID : 1hur.1

HUMAN ADP-RIBOSYLATION FACTOR 1 COMPLEXED WITH GDP, FULL LENGTH NON-MYRISTOYLATED

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.30, E.53 Ligands: GDP.3 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.30, H2O.12, H2O.19, H2O.30, H2O.43 MG.2: 3 residues within 4Å: Chain B: T.30, E.53 Ligands: GDP.4 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.30, B:E.53, H2O.53, H2O.65, H2O.74

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 17 residues within 4Å: Chain A: D.25, A.26, A.27, G.28, K.29, T.30, T.31, N.125, K.126, D.128, L.129, C.158, A.159, T.160 Chain B: G.49, N.51 Ligands: MG.1 18 PLIP interactions: 16 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:A.26, A:A.27, A:G.28, A:K.29, A:T.30, A:T.31, A:N.125, A:K.126, A:K.126, A:A.159, A:T.160, B:N.51 Water bridges: A:T.30, A:T.31, A:E.53, B:G.49 Salt bridges: A:K.29, A:D.128 GDP.4: 18 residues within 4Å: Chain A: I.48, G.49, N.51 Chain B: D.25, A.26, A.27, G.28, K.29, T.30, T.31, N.125, K.126, D.128, L.129, C.158, A.159, T.160 Ligands: MG.2 23 PLIP interactions: 21 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:L.24, B:A.26, B:A.27, B:G.28, B:K.29, B:T.30, B:T.30, B:T.31, B:T.31, B:N.125, B:K.126, B:A.159, B:T.160, A:G.49, A:N.51 Water bridges: B:T.31, B:D.66, B:D.66, B:K.126, B:K.126, B:T.160 Salt bridges: B:K.29, B:D.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Amor, J.C. et al., Structure of the human ADP-ribosylation factor 1 complexed with GDP. Nature (1994)

Release Date

1995-07-10

Peptides

HUMAN ADP-RIBOSYLATION FACTOR 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HUMAN ADP-RIBOSYLATION FACTOR 1