SMTL ID : 1huv.1

CRYSTAL STRUCTURE OF A SOLUBLE MUTANT OF THE MEMBRANE-ASSOCIATED (S)-MANDELATE DEHYDROGENASE FROM PSEUDOMONAS PUTIDA AT 2.15A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: Y.131, R.165, H.255, R.258 Ligands: FMN.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.131 Water bridges: A:G.81, A:G.81, A:G.81, A:G.81 Salt bridges: A:R.165, A:H.255, A:R.258 SO4.4: 5 residues within 4Å: Chain B: Y.131, R.165, H.255, R.258 Ligands: FMN.5 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Y.131 Water bridges: B:G.81, B:G.81, B:G.81, B:G.81 Salt bridges: B:R.165, B:H.255, B:R.258 SO4.7: 5 residues within 4Å: Chain C: Y.131, R.165, H.255, R.258 Ligands: FMN.8 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:Y.131 Water bridges: C:G.81, C:G.81, C:G.81, C:G.81 Salt bridges: C:R.165, C:H.255, C:R.258 SO4.10: 5 residues within 4Å: Chain D: Y.131, R.165, H.255, R.258 Ligands: FMN.11 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:Y.131 Water bridges: D:G.81, D:G.81, D:G.81, D:G.81 Salt bridges: D:R.165, D:H.255, D:R.258

4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 21 residues within 4Å: Chain A: Y.26, L.27, P.79, T.80, G.81, S.108, Q.129, Y.131, T.156, K.231, S.253, H.255, G.256, R.258, D.284, S.285, G.286, R.288, G.307, R.308 Ligands: SO4.1 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:Y.26, A:T.80, A:R.308 Hydrogen bonds: A:P.79, A:G.81, A:S.108, A:Q.129, A:Q.129, A:Y.131, A:T.156, A:K.231, A:K.231, A:S.253, A:S.285, A:G.286, A:G.307, A:R.308 Water bridges: A:H.255, A:F.287, A:F.287, A:R.288, A:R.308 Salt bridges: A:R.288, A:R.308 FMN.5: 21 residues within 4Å: Chain B: Y.26, L.27, P.79, T.80, G.81, S.108, Q.129, Y.131, T.156, K.231, S.253, H.255, G.256, R.258, D.284, S.285, G.286, R.288, G.307, R.308 Ligands: SO4.4 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:Y.26, B:T.80, B:R.308 Hydrogen bonds: B:P.79, B:G.81, B:S.108, B:Q.129, B:Q.129, B:Y.131, B:T.156, B:K.231, B:K.231, B:S.253, B:S.285, B:G.286, B:G.307, B:R.308 Water bridges: B:H.255, B:F.287, B:F.287, B:R.288, B:R.308 Salt bridges: B:R.288, B:R.308 FMN.8: 21 residues within 4Å: Chain C: Y.26, L.27, P.79, T.80, G.81, S.108, Q.129, Y.131, T.156, K.231, S.253, H.255, G.256, R.258, D.284, S.285, G.286, R.288, G.307, R.308 Ligands: SO4.7 24 PLIP interactions: 24 interactions with chain C Hydrophobic interactions: C:Y.26, C:T.80, C:R.308 Hydrogen bonds: C:P.79, C:G.81, C:S.108, C:Q.129, C:Q.129, C:Y.131, C:T.156, C:K.231, C:K.231, C:S.253, C:S.285, C:G.286, C:G.307, C:R.308 Water bridges: C:H.255, C:F.287, C:F.287, C:R.288, C:R.308 Salt bridges: C:R.288, C:R.308 FMN.11: 21 residues within 4Å: Chain D: Y.26, L.27, P.79, T.80, G.81, S.108, Q.129, Y.131, T.156, K.231, S.253, H.255, G.256, R.258, D.284, S.285, G.286, R.288, G.307, R.308 Ligands: SO4.10 24 PLIP interactions: 24 interactions with chain D Hydrophobic interactions: D:Y.26, D:T.80, D:R.308 Hydrogen bonds: D:P.79, D:G.81, D:S.108, D:Q.129, D:Q.129, D:Y.131, D:T.156, D:K.231, D:K.231, D:S.253, D:S.285, D:G.286, D:G.307, D:R.308 Water bridges: D:H.255, D:F.287, D:F.287, D:R.288, D:R.308 Salt bridges: D:R.288, D:R.308

4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 4 residues within 4Å: Chain A: D.240, I.243, K.276, T.277 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:D.240, A:K.276 MES.6: 4 residues within 4Å: Chain B: D.240, I.243, K.276, T.277 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:D.240, B:K.276 MES.9: 4 residues within 4Å: Chain C: D.240, I.243, K.276, T.277 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:D.240, C:K.276 MES.12: 4 residues within 4Å: Chain D: D.240, I.243, K.276, T.277 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:D.240, D:K.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sukumar, N. et al., Structure of an active soluble mutant of the membrane-associated (S)-mandelate dehydrogenase. Biochemistry (2001)

Release Date

2001-09-19

Peptides

L(+)-MANDELATE DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

L(+)-MANDELATE DEHYDROGENASE

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