SMTL ID : 1hwp.2 (1 other biounit)

EBULIN COMPLEXED WITH PTEROIC ACID, TRIGONAL CRYSTAL FORM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-2-2-mer

Ligands

2 x BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GAL.1: 10 residues within 4Å: Chain B: D.24, V.25, R.26, N.27, G.28, Q.37, W.39, Q.44, N.46, Q.47 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.46, B:V.25, B:N.27, B:G.28, B:Q.37, B:Q.37, B:N.46, B:N.46, B:Q.47 BGC-GAL.4: 10 residues within 4Å: Chain D: D.24, V.25, R.26, N.27, G.28, Q.37, W.39, Q.44, N.46, Q.47 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:N.46, D:D.24, D:V.25, D:N.27, D:G.28, D:Q.37, D:Q.37, D:N.46, D:N.46, D:Q.47

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 5 residues within 4Å: Chain B: Q.138, A.141, Q.174, N.186, R.189 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.5: 5 residues within 4Å: Chain D: Q.138, A.141, Q.174, N.186, R.189 No protein-ligand interaction detected (PLIP)

2 x PT1: PTEROIC ACID(Non-covalent)

PT1.3: 13 residues within 4Å: Chain A: L.76, Y.77, L.78, F.90, G.114, Y.116, I.158, P.162, E.163, R.166, E.194, W.197, L.246 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.77, A:W.197 Hydrogen bonds: A:L.78, A:L.78, A:Y.116, A:R.166, A:R.166, A:S.198 pi-Stacking: A:Y.77, A:Y.77 PT1.6: 13 residues within 4Å: Chain C: L.76, Y.77, L.78, F.90, G.114, Y.116, I.158, P.162, E.163, R.166, E.194, W.197, L.246 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:Y.77, C:W.197 Hydrogen bonds: C:Y.77, C:L.78, C:L.78, C:Y.116, C:R.166, C:R.166, C:S.198 pi-Stacking: C:Y.77, C:Y.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pascal, J.M. et al., 2.8-A crystal structure of a nontoxic type-II ribosome-inactivating protein, ebulin l. Proteins (2001)

Release Date

2001-01-24

Peptides

EBULIN: AC
EBULIN: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

EBULIN

EBULIN

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