SMTL ID : 1hww.1

GOLGI ALPHA-MANNOSIDASE II IN COMPLEX WITH SWAINSONINE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.164 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.120, A:N.164

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.60, D.62, D.174, H.441 Ligands: SWA.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.60, A:D.62, A:D.174, A:H.441

1 x SWA: 1S-8AB-OCTAHYDRO-INDOLIZIDINE-1A,2A,8B-TRIOL(Non-covalent)

SWA.3: 13 residues within 4Å: Chain A: H.60, D.62, W.65, D.174, F.176, R.198, Y.239, D.311, W.385, H.441, D.442, Y.697 Ligands: ZN.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.176, A:W.385, A:W.385, A:Y.697 Hydrogen bonds: A:Y.239, A:D.442, A:T.447, A:Y.697 Water bridges: A:R.198 Salt bridges: A:D.62, A:D.174, A:D.311, A:D.442 pi-Cation interactions: A:W.65

1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.4: 5 residues within 4Å: Chain A: K.33, Q.34, Y.237, H.243, R.380 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.33, A:Y.237, A:Y.237 Water bridges: A:Q.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van den Elsen, J.M. et al., Structure of Golgi alpha-mannosidase II: a target for inhibition of growth and metastasis of cancer cells. EMBO J. (2001)

Release Date

2002-01-10

Peptides

ALPHA-MANNOSIDASE II: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ALPHA-MANNOSIDASE II

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