- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- homo-hexamer
- Ligands
- 24 x PO4: PHOSPHATE ION(Non-functional Binders)
- 6 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
AKG.25: 15 residues within 4Å:- Chain F: K.90, G.92, M.111, K.114, K.126, A.166, P.167, N.168, T.199, R.211, N.349, N.374, V.378, S.381
- Ligands: NAD.33
11 PLIP interactions:11 interactions with chain F- Hydrophobic interactions: F:A.166, F:V.378
- Hydrogen bonds: F:G.92, F:N.168, F:T.199, F:N.349, F:S.381
- Salt bridges: F:K.90, F:K.114, F:K.126, F:R.211
AKG.26: 15 residues within 4Å:- Chain D: K.90, G.92, M.111, K.114, K.126, A.166, P.167, N.168, T.199, R.211, N.349, N.374, V.378, S.381
- Ligands: NAD.41
11 PLIP interactions:11 interactions with chain D- Hydrophobic interactions: D:A.166, D:V.378
- Hydrogen bonds: D:G.92, D:N.168, D:T.199, D:N.349, D:S.381
- Salt bridges: D:K.90, D:K.114, D:K.126, D:R.211
AKG.27: 15 residues within 4Å:- Chain C: K.90, G.92, M.111, K.114, K.126, A.166, P.167, N.168, T.199, R.211, N.349, N.374, V.378, S.381
- Ligands: NAD.37
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:A.166, C:V.378
- Hydrogen bonds: C:G.92, C:N.168, C:T.199, C:N.349, C:S.381
- Salt bridges: C:K.90, C:K.114, C:K.126, C:R.211
AKG.28: 15 residues within 4Å:- Chain E: K.90, G.92, M.111, K.114, K.126, A.166, P.167, N.168, T.199, R.211, N.349, N.374, V.378, S.381
- Ligands: NAD.42
11 PLIP interactions:11 interactions with chain E- Hydrophobic interactions: E:A.166, E:V.378
- Hydrogen bonds: E:G.92, E:N.168, E:T.199, E:N.349, E:S.381
- Salt bridges: E:K.90, E:K.114, E:K.126, E:R.211
AKG.29: 15 residues within 4Å:- Chain B: K.90, G.92, M.111, K.114, K.126, A.166, P.167, N.168, T.199, R.211, N.349, N.374, V.378, S.381
- Ligands: NAD.40
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:A.166, B:V.378
- Hydrogen bonds: B:G.92, B:N.168, B:T.199, B:N.349, B:S.381
- Salt bridges: B:K.90, B:K.114, B:K.126, B:R.211
AKG.30: 15 residues within 4Å:- Chain A: K.90, G.92, M.111, K.114, K.126, A.166, P.167, N.168, T.199, R.211, N.349, N.374, V.378, S.381
- Ligands: NAD.38
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:A.166, A:V.378
- Hydrogen bonds: A:G.92, A:N.168, A:T.199, A:N.349, A:S.381
- Salt bridges: A:K.90, A:K.114, A:K.126, A:R.211
- 12 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Covalent)(Non-covalent)
NAD.31: 21 residues within 4Å:- Chain C: Q.85, R.86, T.87, C.115, A.116, D.119, V.120, P.121, F.122, Y.382, K.488
- Chain D: H.195, Q.205, G.206, K.387, N.388, N.390, H.391, V.392, S.393, E.445
16 PLIP interactions:11 interactions with chain C, 5 interactions with chain D- Hydrogen bonds: C:R.86, C:T.87, C:T.87, C:D.119, C:V.120, C:V.120, C:F.122, C:Y.382, C:K.488, D:N.388, D:S.393, D:S.393
- pi-Cation interactions: C:R.86, C:R.86
- Salt bridges: D:K.387, D:K.387
NAD.32: 21 residues within 4Å:- Chain A: H.195, Q.205, G.206, K.387, N.388, N.390, H.391, V.392, S.393, E.445
- Chain B: Q.85, R.86, T.87, C.115, A.116, D.119, V.120, P.121, F.122, Y.382, K.488
15 PLIP interactions:10 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:R.86, B:T.87, B:T.87, B:D.119, B:V.120, B:V.120, B:F.122, B:K.488, A:N.388, A:S.393, A:S.393
- pi-Cation interactions: B:R.86, B:R.86
- Salt bridges: A:K.387, A:K.387
NAD.33: 25 residues within 4Å:- Chain F: R.94, N.168, M.169, S.170, R.211, T.215, Q.250, G.251, F.252, G.253, N.254, V.255, G.274, E.275, S.276, K.295, A.325, A.326, S.327, Q.330, G.347, A.348, N.349, N.374
- Ligands: AKG.25
22 PLIP interactions:22 interactions with chain F- Hydrophobic interactions: F:T.215, F:N.374
- Hydrogen bonds: F:R.94, F:N.168, F:S.170, F:R.211, F:T.215, F:Q.250, F:G.251, F:F.252, F:F.252, F:N.254, F:N.254, F:V.255, F:S.276, F:K.295, F:A.326, F:S.327, F:S.327, F:Q.330, F:N.349, F:N.349
NAD.34: 21 residues within 4Å:- Chain D: Q.85, R.86, T.87, C.115, A.116, D.119, V.120, P.121, F.122, Y.382, K.488
- Chain E: H.195, Q.205, G.206, K.387, N.388, N.390, H.391, V.392, S.393, E.445
17 PLIP interactions:12 interactions with chain D, 5 interactions with chain E- Hydrogen bonds: D:R.86, D:T.87, D:T.87, D:D.119, D:D.119, D:V.120, D:V.120, D:F.122, D:Y.382, D:K.488, E:N.388, E:S.393, E:S.393
- pi-Cation interactions: D:R.86, D:R.86
- Salt bridges: E:K.387, E:K.387
NAD.35: 21 residues within 4Å:- Chain B: H.195, Q.205, G.206, K.387, N.388, N.390, H.391, V.392, S.393, E.445
- Chain F: Q.85, R.86, T.87, C.115, A.116, D.119, V.120, P.121, F.122, Y.382, K.488
15 PLIP interactions:10 interactions with chain F, 5 interactions with chain B- Hydrogen bonds: F:R.86, F:T.87, F:T.87, F:D.119, F:V.120, F:V.120, F:F.122, F:K.488, B:N.388, B:S.393, B:S.393
- pi-Cation interactions: F:R.86, F:R.86
- Salt bridges: B:K.387, B:K.387
NAD.36: 21 residues within 4Å:- Chain C: H.195, Q.205, G.206, K.387, N.388, N.390, H.391, V.392, S.393, E.445
- Chain E: Q.85, R.86, T.87, C.115, A.116, D.119, V.120, P.121, F.122, Y.382, K.488
17 PLIP interactions:12 interactions with chain E, 5 interactions with chain C- Hydrogen bonds: E:R.86, E:T.87, E:T.87, E:D.119, E:D.119, E:V.120, E:V.120, E:F.122, E:Y.382, E:K.488, C:N.388, C:S.393, C:S.393
- pi-Cation interactions: E:R.86, E:R.86
- Salt bridges: C:K.387, C:K.387
NAD.37: 25 residues within 4Å:- Chain C: R.94, N.168, M.169, S.170, R.211, T.215, Q.250, G.251, F.252, G.253, N.254, V.255, G.274, E.275, S.276, K.295, A.325, A.326, S.327, Q.330, G.347, A.348, N.349, N.374
- Ligands: AKG.27
23 PLIP interactions:23 interactions with chain C- Hydrophobic interactions: C:T.215, C:N.374
- Hydrogen bonds: C:R.94, C:N.168, C:S.170, C:R.211, C:T.215, C:Q.250, C:G.251, C:F.252, C:F.252, C:N.254, C:N.254, C:V.255, C:E.275, C:S.276, C:K.295, C:A.326, C:S.327, C:S.327, C:Q.330, C:N.349, C:N.349
NAD.38: 25 residues within 4Å:- Chain A: R.94, N.168, M.169, S.170, R.211, T.215, Q.250, G.251, F.252, G.253, N.254, V.255, G.274, E.275, S.276, K.295, A.325, A.326, S.327, Q.330, G.347, A.348, N.349, N.374
- Ligands: AKG.30
22 PLIP interactions:22 interactions with chain A- Hydrophobic interactions: A:T.215, A:N.374
- Hydrogen bonds: A:R.94, A:N.168, A:S.170, A:R.211, A:Q.250, A:G.251, A:F.252, A:F.252, A:N.254, A:N.254, A:V.255, A:E.275, A:S.276, A:K.295, A:A.326, A:S.327, A:S.327, A:Q.330, A:N.349, A:N.349
NAD.39: 21 residues within 4Å:- Chain A: Q.85, R.86, T.87, C.115, A.116, D.119, V.120, P.121, F.122, Y.382, K.488
- Chain F: H.195, Q.205, G.206, K.387, N.388, N.390, H.391, V.392, S.393, E.445
16 PLIP interactions:11 interactions with chain A, 5 interactions with chain F- Hydrogen bonds: A:R.86, A:T.87, A:T.87, A:D.119, A:D.119, A:V.120, A:V.120, A:F.122, A:K.488, F:N.388, F:S.393, F:S.393
- pi-Cation interactions: A:R.86, A:R.86
- Salt bridges: F:K.387, F:K.387
NAD.40: 25 residues within 4Å:- Chain B: R.94, N.168, M.169, S.170, R.211, T.215, Q.250, G.251, F.252, G.253, N.254, V.255, G.274, E.275, S.276, K.295, A.325, A.326, S.327, Q.330, G.347, A.348, N.349, N.374
- Ligands: AKG.29
22 PLIP interactions:22 interactions with chain B- Hydrophobic interactions: B:T.215, B:N.374
- Hydrogen bonds: B:R.94, B:N.168, B:S.170, B:R.211, B:Q.250, B:G.251, B:F.252, B:F.252, B:N.254, B:N.254, B:V.255, B:E.275, B:S.276, B:K.295, B:A.326, B:S.327, B:S.327, B:Q.330, B:N.349, B:N.349
NAD.41: 25 residues within 4Å:- Chain D: R.94, N.168, M.169, S.170, R.211, T.215, Q.250, G.251, F.252, G.253, N.254, V.255, G.274, E.275, S.276, K.295, A.325, A.326, S.327, Q.330, G.347, A.348, N.349, N.374
- Ligands: AKG.26
22 PLIP interactions:22 interactions with chain D- Hydrophobic interactions: D:T.215, D:N.374
- Hydrogen bonds: D:R.94, D:N.168, D:S.170, D:R.211, D:Q.250, D:G.251, D:F.252, D:F.252, D:N.254, D:N.254, D:V.255, D:E.275, D:S.276, D:K.295, D:A.326, D:S.327, D:S.327, D:Q.330, D:N.349, D:N.349
NAD.42: 25 residues within 4Å:- Chain E: R.94, N.168, M.169, S.170, R.211, T.215, Q.250, G.251, F.252, G.253, N.254, V.255, G.274, E.275, S.276, K.295, A.325, A.326, S.327, Q.330, G.347, A.348, N.349, N.374
- Ligands: AKG.28
22 PLIP interactions:22 interactions with chain E- Hydrophobic interactions: E:T.215, E:N.374
- Hydrogen bonds: E:R.94, E:N.168, E:S.170, E:R.211, E:T.215, E:Q.250, E:G.251, E:F.252, E:F.252, E:N.254, E:N.254, E:V.255, E:S.276, E:K.295, E:A.326, E:S.327, E:S.327, E:Q.330, E:N.349, E:N.349
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Smith, T.J. et al., Structures of bovine glutamate dehydrogenase complexes elucidate the mechanism of purine regulation. J.Mol.Biol. (2001)
- Release Date
- 2001-01-31
- Peptides
- GLUTAMATE DEHYDROGENASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- homo-hexamer
- Ligands
- 24 x PO4: PHOSPHATE ION(Non-functional Binders)
- 6 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
- 12 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Covalent)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Smith, T.J. et al., Structures of bovine glutamate dehydrogenase complexes elucidate the mechanism of purine regulation. J.Mol.Biol. (2001)
- Release Date
- 2001-01-31
- Peptides
- GLUTAMATE DEHYDROGENASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F