SMTL ID : 1hx6.1

P3, THE MAJOR COAT PROTEIN OF THE LIPID-CONTAINING BACTERIOPHAGE PRD1.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-trimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain B: F.46, D.47, N.50, R.51 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: F.46, D.47, N.50 Ligand excluded by PLIP

7 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain B: D.142, N.145, D.148 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.148 Water bridges: B:D.148 NA.4: 1 residues within 4Å: Chain B: N.198 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.198 NA.5: 1 residues within 4Å: Chain A: N.261 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.261 Water bridges: A:E.110, A:E.260, A:N.261, A:N.261 NA.6: 1 residues within 4Å: Chain A: N.198 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.198 NA.7: 3 residues within 4Å: Chain A: D.142, N.145, D.148 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.142 NA.8: 3 residues within 4Å: Chain B: R.107, E.110, E.260 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.110 NA.9: 1 residues within 4Å: Chain C: N.50 No protein-ligand interaction detected (PLIP)

18 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.10: 8 residues within 4Å: Chain A: Q.106, R.107, H.108, L.256, N.258, E.260, Y.281, Y.378 Ligand excluded by PLIP MPD.11: 4 residues within 4Å: Chain B: Q.326, R.329 Chain C: L.68, W.166 Ligand excluded by PLIP MPD.12: 4 residues within 4Å: Chain A: Q.326, R.329 Chain B: W.166, E.173 Ligand excluded by PLIP MPD.13: 2 residues within 4Å: Chain A: Y.171, R.345 Ligand excluded by PLIP MPD.14: 4 residues within 4Å: Chain A: D.104, L.250, L.253, R.382 Ligand excluded by PLIP MPD.15: 3 residues within 4Å: Chain B: D.55, R.190 Ligands: MPD.16 Ligand excluded by PLIP MPD.16: 3 residues within 4Å: Chain B: V.53, D.55 Ligands: MPD.15 Ligand excluded by PLIP MPD.17: 2 residues within 4Å: Chain B: N.78, D.221 Ligand excluded by PLIP MPD.18: 6 residues within 4Å: Chain A: Q.40, Y.232 Chain C: N.303, Y.304, K.317, D.319 Ligand excluded by PLIP MPD.19: 5 residues within 4Å: Chain B: Y.171, L.284, R.345, D.346, P.348 Ligand excluded by PLIP MPD.20: 6 residues within 4Å: Chain B: E.260, N.261, S.262, Q.276, Y.283, Y.376 Ligand excluded by PLIP MPD.21: 4 residues within 4Å: Chain B: Y.304, K.317 Chain C: Q.40, Y.232 Ligand excluded by PLIP MPD.22: 5 residues within 4Å: Chain B: D.104, L.181, L.250, L.253, R.382 Ligand excluded by PLIP MPD.23: 2 residues within 4Å: Chain C: N.105, R.190 Ligand excluded by PLIP MPD.24: 5 residues within 4Å: Chain C: D.104, L.250, L.253, S.254, R.382 Ligand excluded by PLIP MPD.25: 5 residues within 4Å: Chain C: A.122, K.123, Y.171, S.172, R.345 Ligand excluded by PLIP MPD.26: 6 residues within 4Å: Chain C: Y.171, L.284, R.345, D.346, P.348, F.379 Ligand excluded by PLIP MPD.27: 4 residues within 4Å: Chain A: L.68, W.166 Chain C: Q.326, R.329 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benson, S.D. et al., The X-ray crystal structure of P3, the major coat protein of the lipid-containing bacteriophage PRD1, at 1.65 A resolution. Acta Crystallogr.,Sect.D (2002)

Release Date

2001-01-24

Peptides

MAJOR CAPSID PROTEIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

MAJOR CAPSID PROTEIN

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