SMTL ID : 1hxx.1

OMPF PORIN MUTANT Y106F

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-trimer

Ligands

12 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.1: 2 residues within 4Å: Chain A: Y.157 Ligands: C8E.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.157, A:Y.157 C8E.2: 4 residues within 4Å: Chain A: Y.98 Chain B: H.21, V.334 Ligands: C8E.3 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.98, B:H.21, B:V.334 C8E.3: 5 residues within 4Å: Chain A: Y.157, L.158, G.173 Ligands: C8E.1, C8E.2 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.157 C8E.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) C8E.5: 2 residues within 4Å: Chain B: Y.157 Ligands: C8E.7 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.157, B:Y.157 C8E.6: 4 residues within 4Å: Chain B: Y.98 Chain C: H.21, V.334 Ligands: C8E.7 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:Y.98, C:H.21, C:V.334 C8E.7: 5 residues within 4Å: Chain B: Y.157, L.158, G.173 Ligands: C8E.5, C8E.6 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Y.157 C8E.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) C8E.9: 2 residues within 4Å: Chain C: Y.157 Ligands: C8E.11 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:Y.157, C:Y.157 C8E.10: 4 residues within 4Å: Chain A: H.21, V.334 Chain C: Y.98 Ligands: C8E.11 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:Y.98, A:H.21, A:V.334 C8E.11: 5 residues within 4Å: Chain C: Y.157, L.158, G.173 Ligands: C8E.9, C8E.10 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:Y.157 C8E.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Phale, P.S. et al., Role of charged residues at the OmpF porin channel constriction probed by mutagenesis and simulation. Biochemistry (2001)

Release Date

2001-06-06

Peptides

OUTER MEMBRANE PROTEIN F: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Membrane

We predict this structure to be a membrane protein.
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OUTER MEMBRANE PROTEIN F