SMTL ID : 1hy0.1

CRYSTAL STRUCTURE OF WILD TYPE DUCK DELTA 1 CRYSTALLIN (EYE LENS PROTEIN)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: S.281, M.284, K.287, N.289 Chain B: T.159, H.160 Chain D: N.114 8 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B, 1 interactions with chain D Hydrogen bonds: A:N.289, D:N.114 Water bridges: A:T.279, A:G.280, B:H.160, B:H.160 Salt bridges: A:K.287, B:H.160 SO4.2: 7 residues within 4Å: Chain A: T.159, H.160 Chain B: S.281, M.284, K.287, N.289 Chain C: N.114 8 PLIP interactions: 4 interactions with chain B, 2 interactions with chain C, 2 interactions with chain A Hydrogen bonds: B:S.281, B:N.289, C:N.114, C:N.114, A:T.159 Water bridges: B:S.282 Salt bridges: B:K.287, A:H.160 SO4.3: 7 residues within 4Å: Chain B: N.114 Chain C: S.281, M.284, K.287, N.289 Chain D: T.159, H.160 9 PLIP interactions: 5 interactions with chain C, 1 interactions with chain B, 3 interactions with chain D Hydrogen bonds: C:N.289, B:N.114, D:T.159 Water bridges: C:T.279, C:T.279, C:G.280, D:H.160 Salt bridges: C:K.287, D:H.160 SO4.4: 7 residues within 4Å: Chain A: N.114 Chain C: T.159, H.160 Chain D: S.281, M.284, K.287, N.289 7 PLIP interactions: 4 interactions with chain D, 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: D:S.281, D:N.289, A:N.114, A:N.114 Water bridges: D:S.282 Salt bridges: D:K.287, C:H.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sampaleanu, L.M. et al., Structural studies of duck delta 1 and delta 2 crystallin suggest conformational changes occur during catalysis. Biochemistry (2001)

Release Date

2001-04-21

Peptides

DELTA CRYSTALLIN I: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

DELTA CRYSTALLIN I