SMTL ID : 1hyg.1

Crystal structure of MJ0490 gene product, the family of lactate/malate dehydrogenase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 21 residues within 4Å: Chain A: G.7, S.9, G.10, R.11, V.12, G.13, G.33, R.34, H.36, S.37, T.81, S.82, G.83, P.85, I.102, Y.106, T.122, N.123, H.178, G.227, S.228 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.7, A:S.9, A:G.10, A:R.11, A:V.12, A:G.13, A:R.34, A:S.37, A:T.81, A:G.83, A:Y.106, A:T.122, A:N.123, A:H.178 Salt bridges: A:H.36 NAP.2: 24 residues within 4Å: Chain B: G.7, S.9, G.10, R.11, V.12, G.13, G.33, R.34, H.36, S.37, T.81, S.82, G.83, I.102, K.105, Y.106, I.121, T.122, N.123, L.146, R.154, H.178, G.227, S.228 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:G.7, B:S.9, B:R.11, B:V.12, B:G.13, B:R.34, B:S.37, B:T.81, B:G.83, B:K.105, B:N.123, B:R.154 Water bridges: B:S.9, B:I.32 Salt bridges: B:H.36 pi-Cation interactions: B:R.34 NAP.3: 21 residues within 4Å: Chain C: G.7, S.9, G.10, R.11, V.12, G.13, G.33, R.34, H.36, S.37, T.81, S.82, G.83, P.85, I.102, Y.106, T.122, N.123, H.178, G.227, S.228 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:G.7, C:S.9, C:G.10, C:R.11, C:V.12, C:G.13, C:R.34, C:S.37, C:T.81, C:G.83, C:Y.106, C:T.122, C:N.123, C:H.178 Salt bridges: C:H.36 NAP.4: 24 residues within 4Å: Chain D: G.7, S.9, G.10, R.11, V.12, G.13, G.33, R.34, H.36, S.37, T.81, S.82, G.83, I.102, K.105, Y.106, I.121, T.122, N.123, L.146, R.154, H.178, G.227, S.228 16 PLIP interactions: 16 interactions with chain D Hydrogen bonds: D:G.7, D:S.9, D:R.11, D:V.12, D:G.13, D:R.34, D:S.37, D:T.81, D:G.83, D:K.105, D:N.123, D:R.154 Water bridges: D:S.9, D:I.32 Salt bridges: D:H.36 pi-Cation interactions: D:R.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, B.I. et al., Crystal structure of the MJ0490 gene product of the hyperthermophilic archaebacterium Methanococcus jannaschii, a novel member of the lactate/malate family of dehydrogenases. J.Mol.Biol. (2001)

Release Date

2001-04-25

Peptides

L-LACTATE/MALATE DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

L-LACTATE/MALATE DEHYDROGENASE

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