SMTL ID : 1hyo.1

CRYSTAL STRUCTURE OF FUMARYLACETOACETATE HYDROLASE COMPLEXED WITH 4-(HYDROXYMETHYLPHOSPHINOYL)-3-OXO-BUTANOIC ACID

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.235, W.236, K.255, G.258, T.259 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.235, A:W.236, A:K.255, A:G.258, A:T.259 MG.2: 5 residues within 4Å: Chain B: D.235, W.236, K.255, G.258, T.259 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.235, B:W.236, B:K.255, B:G.258, B:T.259

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: D.128, Y.161, E.201, E.203, D.235 Ligands: HBU.9 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.128, A:E.201, A:E.203, A:D.235 CA.4: 6 residues within 4Å: Chain B: D.128, Y.161, E.201, E.203, D.235 Ligands: HBU.8 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.128, B:E.201, B:E.203, B:D.235

1 x NI: NICKEL (II) ION(Non-covalent)

NI.5: 1 residues within 4Å: Chain B: G.1 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:G.1, H2O.653, H2O.700, H2O.701

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 6 residues within 4Å: Chain A: Y.130, V.139, R.144, L.151 Chain B: P.248 Ligands: HBU.9 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.139, B:P.248 Hydrogen bonds: A:Y.130, A:Y.130 Water bridges: A:R.144 Salt bridges: A:R.144 ACT.7: 6 residues within 4Å: Chain A: P.248 Chain B: Y.130, V.139, R.144, L.151 Ligands: HBU.8 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:V.139, A:P.248 Hydrogen bonds: B:Y.130 Water bridges: B:G.140, B:Y.246 Salt bridges: B:R.144

2 x HBU: 4-[HYDROXY-[METHYL-PHOSPHINOYL]]-3-OXO-BUTANOIC ACID(Non-covalent)

HBU.8: 16 residues within 4Å: Chain A: L.249 Chain B: D.128, F.129, Y.130, H.135, Y.161, E.201, E.203, D.235, R.239, Q.242, K.255, G.351, T.352 Ligands: CA.4, ACT.7 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Y.130 Hydrogen bonds: B:Y.161, B:R.239, B:Q.242, B:K.255, B:T.352, B:T.352 Water bridges: B:H.135, B:E.201 Salt bridges: B:H.135 HBU.9: 16 residues within 4Å: Chain A: D.128, F.129, Y.130, H.135, Y.161, E.201, E.203, D.235, R.239, Q.242, K.255, G.351, T.352 Chain B: L.249 Ligands: CA.3, ACT.6 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.130 Hydrogen bonds: A:R.239, A:Q.242, A:K.255, A:T.352 Water bridges: A:E.201, A:T.352 Salt bridges: A:H.135

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Bateman, R.L. et al., Mechanistic inferences from the crystal structure of fumarylacetoacetate hydrolase with a bound phosphorus-based inhibitor. J.Biol.Chem. (2001)

Release Date

2001-02-14

Peptides

FUMARYLACETOACETATE HYDROLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

FUMARYLACETOACETATE HYDROLASE

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