- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x CD: CADMIUM ION(Non-covalent)
CD.2: 5 residues within 4Å:- Chain A: H.22, H.168, H.197
- Ligands: ZN.1, FMT.14
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:H.168, A:H.197, H2O.9, H2O.12, H2O.13
CD.16: 4 residues within 4Å:- Chain B: H.168, H.197
- Ligands: ZN.15, FMT.25
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:H.168, B:H.197, H2O.27, H2O.27, H2O.27
- 2 x NA: SODIUM ION(Non-functional Binders)
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 8 residues within 4Å:- Chain A: H.24, W.98, D.268, F.273, S.275
- Ligands: ZN.1, EDO.13, FMT.14
1 PLIP interactions:1 interactions with chain A- Water bridges: A:D.268
EDO.5: 1 residues within 4Å:- Chain A: L.149
No protein-ligand interaction detected (PLIP)EDO.6: 5 residues within 4Å:- Chain A: A.47, E.48, V.51, E.82, A.86
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.82
- Water bridges: A:E.82, A:E.82, A:A.86
EDO.7: 3 residues within 4Å:- Chain A: T.114, R.156
- Ligands: EDO.8
2 PLIP interactions:2 interactions with chain A- Water bridges: A:T.114, A:R.156
EDO.8: 1 residues within 4Å:- Ligands: EDO.7
No protein-ligand interaction detected (PLIP)EDO.10: 6 residues within 4Å:- Chain A: D.100, P.101, P.102
- Chain B: D.100, P.101, P.102
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:D.100, B:D.100
- Water bridges: B:R.106
EDO.11: 4 residues within 4Å:- Chain A: S.14, E.15, G.17, R.63
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.63, A:H.90
EDO.12: 3 residues within 4Å:- Chain A: R.8, G.9, P.10
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:P.10
EDO.13: 7 residues within 4Å:- Chain A: W.98, F.99, F.273, S.275, Y.276
- Chain B: L.103
- Ligands: EDO.4
No protein-ligand interaction detected (PLIP)EDO.18: 8 residues within 4Å:- Chain B: H.24, W.98, D.268, F.273, S.275
- Ligands: ZN.15, EDO.24, FMT.25
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:H.24
- Water bridges: B:S.275
EDO.19: 2 residues within 4Å:- Chain B: T.114, R.156
2 PLIP interactions:2 interactions with chain B- Water bridges: B:T.114, B:R.156
EDO.20: 4 residues within 4Å:- Chain B: R.43, K.44, A.47, E.82
2 PLIP interactions:2 interactions with chain B- Water bridges: B:R.43, B:E.82
EDO.21: 5 residues within 4Å:- Chain B: P.223, W.244, V.287, N.288, F.294
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:P.223
- Water bridges: B:V.287
EDO.23: 5 residues within 4Å:- Chain B: S.14, E.15, G.17, R.63, H.90
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.90
EDO.24: 6 residues within 4Å:- Chain B: H.224, D.268, L.270, F.273, M.284
- Ligands: EDO.18
4 PLIP interactions:4 interactions with chain B- Water bridges: B:H.24, B:H.221, B:D.268, B:D.268
- 2 x PEL: 2-PHENYL-ETHANOL(Non-covalent)
PEL.9: 7 residues within 4Å:- Chain A: M.260, K.261, E.311, T.312, G.315, I.316, N.320
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:M.260, A:K.261
PEL.22: 8 residues within 4Å:- Chain B: M.260, K.261, E.311, T.312, G.315, I.316, N.320, R.323
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:M.260, B:K.261
- Hydrogen bonds: B:K.261, B:K.261
- 2 x FMT: FORMIC ACID(Non-functional Binders)
FMT.14: 11 residues within 4Å:- Chain A: H.22, H.24, V.68, I.73, W.98, K.136, H.168, H.197
- Ligands: ZN.1, CD.2, EDO.4
No protein-ligand interaction detected (PLIP)FMT.25: 11 residues within 4Å:- Chain B: H.22, H.24, V.68, I.73, W.98, K.136, H.168, H.197
- Ligands: ZN.15, CD.16, EDO.18
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Benning, M.M. et al., High resolution X-ray structures of different metal-substituted forms of phosphotriesterase from Pseudomonas diminuta. Biochemistry (2001)
- Release Date
- 2001-04-04
- Peptides
- PHOSPHOTRIESTERASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x CD: CADMIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x PEL: 2-PHENYL-ETHANOL(Non-covalent)
- 2 x FMT: FORMIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Benning, M.M. et al., High resolution X-ray structures of different metal-substituted forms of phosphotriesterase from Pseudomonas diminuta. Biochemistry (2001)
- Release Date
- 2001-04-04
- Peptides
- PHOSPHOTRIESTERASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B