- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.3: 27 residues within 4Å:- Chain A: G.18, D.20, G.21, Y.22, C.23, D.42, N.43, L.44, V.45, R.46, G.84, D.85, I.86, F.107, G.108, E.109, R.111, N.129, L.153, G.154, Y.192, K.196, Q.219, G.220, V.221, V.222
- Ligands: UPG.4
29 PLIP interactions:29 interactions with chain A- Hydrophobic interactions: A:Q.219, A:V.222
- Hydrogen bonds: A:G.18, A:Y.22, A:C.23, A:G.24, A:N.43, A:L.44, A:V.45, A:R.46, A:I.86, A:E.109, A:N.129, A:N.129, A:K.196, A:V.222
- Water bridges: A:D.20, A:G.21, A:R.47, A:F.107, A:E.109, A:R.111, A:R.111, A:R.111, A:Y.125, A:F.246, A:T.248
- Salt bridges: A:R.111, A:R.111
NAD.7: 27 residues within 4Å:- Chain B: G.18, D.20, G.21, Y.22, C.23, D.42, N.43, L.44, V.45, R.46, G.84, D.85, I.86, F.107, G.108, E.109, R.111, N.129, L.153, G.154, Y.192, K.196, Q.219, G.220, V.221, V.222
- Ligands: UPG.8
31 PLIP interactions:31 interactions with chain B- Hydrophobic interactions: B:Q.219, B:V.222
- Hydrogen bonds: B:G.18, B:Y.22, B:C.23, B:G.24, B:N.43, B:L.44, B:V.45, B:R.46, B:D.85, B:I.86, B:E.109, B:N.129, B:N.129, B:Y.192, B:K.196, B:V.222
- Water bridges: B:G.21, B:D.42, B:R.47, B:F.107, B:E.109, B:R.111, B:R.111, B:R.111, B:F.246, B:T.248, B:T.248
- Salt bridges: B:R.111, B:R.111
NAD.11: 27 residues within 4Å:- Chain C: G.18, D.20, G.21, Y.22, C.23, D.42, N.43, L.44, V.45, R.46, G.84, D.85, I.86, F.107, G.108, E.109, R.111, N.129, L.153, G.154, Y.192, K.196, Q.219, G.220, V.221, V.222
- Ligands: UPG.12
29 PLIP interactions:29 interactions with chain C- Hydrophobic interactions: C:Q.219, C:V.222
- Hydrogen bonds: C:G.18, C:Y.22, C:C.23, C:G.24, C:N.43, C:L.44, C:V.45, C:R.46, C:I.86, C:E.109, C:N.129, C:N.129, C:K.196, C:V.222
- Water bridges: C:D.20, C:G.21, C:R.47, C:F.107, C:E.109, C:R.111, C:R.111, C:R.111, C:Y.125, C:F.246, C:T.248
- Salt bridges: C:R.111, C:R.111
NAD.15: 27 residues within 4Å:- Chain D: G.18, D.20, G.21, Y.22, C.23, D.42, N.43, L.44, V.45, R.46, G.84, D.85, I.86, F.107, G.108, E.109, R.111, N.129, L.153, G.154, Y.192, K.196, Q.219, G.220, V.221, V.222
- Ligands: UPG.16
31 PLIP interactions:31 interactions with chain D- Hydrophobic interactions: D:Q.219, D:V.222
- Hydrogen bonds: D:G.18, D:Y.22, D:C.23, D:G.24, D:N.43, D:L.44, D:V.45, D:R.46, D:D.85, D:I.86, D:E.109, D:N.129, D:N.129, D:Y.192, D:K.196, D:V.222
- Water bridges: D:G.21, D:D.42, D:R.47, D:F.107, D:E.109, D:R.111, D:R.111, D:R.111, D:F.246, D:T.248, D:T.248
- Salt bridges: D:R.111, D:R.111
- 4 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)
UPG.4: 21 residues within 4Å:- Chain A: R.111, A.113, A.155, M.156, G.157, Y.192, H.193, Q.219, V.221, T.248, A.249, R.252, F.253, T.264, Y.266, Q.271, R.273, V.310, R.337, E.339
- Ligands: NAD.3
24 PLIP interactions:24 interactions with chain A- Hydrogen bonds: A:R.111, A:R.111, A:M.156, A:G.157, A:Y.192, A:Y.192, A:Q.219, A:A.249, A:R.252, A:T.264, A:T.264, A:Y.266, A:Q.271, A:E.339
- Water bridges: A:F.246, A:G.247, A:R.337, A:R.337, A:R.337
- Salt bridges: A:H.193, A:H.193, A:R.337, A:R.337
- pi-Stacking: A:Y.266
UPG.8: 21 residues within 4Å:- Chain B: R.111, A.113, A.155, M.156, G.157, Y.192, H.193, Q.219, V.221, T.248, A.249, R.252, F.253, T.264, Y.266, Q.271, R.273, V.310, R.337, E.339
- Ligands: NAD.7
22 PLIP interactions:22 interactions with chain B- Hydrogen bonds: B:R.111, B:R.111, B:M.156, B:G.157, B:Y.192, B:Q.219, B:A.249, B:R.252, B:T.264, B:Y.266, B:Q.271, B:E.339
- Water bridges: B:F.246, B:G.247, B:R.337, B:R.337, B:R.337
- Salt bridges: B:H.193, B:H.193, B:R.337, B:R.337
- pi-Stacking: B:Y.266
UPG.12: 21 residues within 4Å:- Chain C: R.111, A.113, A.155, M.156, G.157, Y.192, H.193, Q.219, V.221, T.248, A.249, R.252, F.253, T.264, Y.266, Q.271, R.273, V.310, R.337, E.339
- Ligands: NAD.11
24 PLIP interactions:24 interactions with chain C- Hydrogen bonds: C:R.111, C:R.111, C:M.156, C:G.157, C:Y.192, C:Y.192, C:Q.219, C:A.249, C:R.252, C:T.264, C:T.264, C:Y.266, C:Q.271, C:E.339
- Water bridges: C:F.246, C:G.247, C:R.337, C:R.337, C:R.337
- Salt bridges: C:H.193, C:H.193, C:R.337, C:R.337
- pi-Stacking: C:Y.266
UPG.16: 21 residues within 4Å:- Chain D: R.111, A.113, A.155, M.156, G.157, Y.192, H.193, Q.219, V.221, T.248, A.249, R.252, F.253, T.264, Y.266, Q.271, R.273, V.310, R.337, E.339
- Ligands: NAD.15
22 PLIP interactions:22 interactions with chain D- Hydrogen bonds: D:R.111, D:R.111, D:M.156, D:G.157, D:Y.192, D:Q.219, D:A.249, D:R.252, D:T.264, D:Y.266, D:Q.271, D:E.339
- Water bridges: D:F.246, D:G.247, D:R.337, D:R.337, D:R.337
- Salt bridges: D:H.193, D:H.193, D:R.337, D:R.337
- pi-Stacking: D:Y.266
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Theisen, M.J. et al., Characterization of the Active Site of UDP-sulfoquinovose Synthase: Formation of the Sulfonic Acid Product in the Crystalline State. To be Published
- Release Date
- 2003-07-01
- Peptides
- SULFOLIPID BIOSYNTHESIS PROTEIN SQD1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Theisen, M.J. et al., Characterization of the Active Site of UDP-sulfoquinovose Synthase: Formation of the Sulfonic Acid Product in the Crystalline State. To be Published
- Release Date
- 2003-07-01
- Peptides
- SULFOLIPID BIOSYNTHESIS PROTEIN SQD1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A