SMTL ID : 1i3u.1

THREE-DIMENSIONAL STRUCTURE OF A LLAMA VHH DOMAIN COMPLEXED WITH THE DYE RR1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: Q.39, R.45 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.39, A:Q.39 Water bridges: A:R.45, A:Y.100 Salt bridges: A:R.45

1 x RR1: 5-(4,6-DIAMINO-[1,3,5]TRIAZIN-2-YLAMINO)-4-HYDROXY-3-(2-SULFO-PHENYLAZO)-NAPHTHALENE-2,7-DISULFONIC ACID(Non-covalent)

RR1.2: 14 residues within 4Å: Chain A: V.33, T.50, G.52, R.53, N.54, L.55, V.56, Y.62, R.64, K.104, T.107, W.108, G.109, G.110 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:T.107 Hydrogen bonds: A:R.53, A:N.54, A:N.54, A:N.54, A:L.55, A:Y.62, A:W.108, A:G.110 Water bridges: A:T.107 Salt bridges: A:R.53, A:R.64, A:K.104 pi-Stacking: A:Y.62, A:Y.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spinelli, S. et al., Lateral recognition of a dye hapten by a llama VHH domain. J.Mol.Biol. (2001)

Release Date

2001-08-08

Peptides

ANTIBODY VHH LAMA DOMAIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ANTIBODY VHH LAMA DOMAIN