SMTL ID : 1i4m.1

Crystal structure of the human prion protein reveals a mechanism for oligomerization

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

4 x CD: CADMIUM ION(Non-covalent)

CD.1: 2 residues within 4Å: Chain A: H.22, D.29 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.22, A:D.29, A:D.29, H2O.1, H2O.2 CD.2: 1 residues within 4Å: Chain A: H.59 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.59, H2O.5, H2O.6, H2O.7, H2O.8 CD.4: 2 residues within 4Å: Chain B: H.22, D.29 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.22, B:D.29, B:D.29, H2O.114, H2O.115 CD.5: 1 residues within 4Å: Chain B: H.59 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:H.59, H2O.118, H2O.119, H2O.120, H2O.121

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: S.14 Chain B: Q.99, R.102 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: Q.99, R.102 Chain B: S.14 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Knaus, K.J. et al., Crystal structure of the human prion protein reveals a mechanism for oligomerization. Nat.Struct.Biol. (2001)

Release Date

2002-02-27

Peptides

MAJOR PRION PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

MAJOR PRION PROTEIN